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CTGCAGAATTTGCTCCAGACATCACCATCATATCTGCAGGATTTGATGCAGCGAGGGGTGACCCTCTGGGTTGTTGTGATgtaagttcgtaagactaacacatgattgttgtctctaaatcatgaacctgtttttttccacttccatttttgcatcattttagaaatctttgatgattct...
species | Oryza sativa |
transcript | LOC_Os07g06980.1 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: AATCTGCAGGATTTGATGCAGCGAGGGGTGACCCTCTGGGTTGTTGTGAT GTCACACCTGCTGGATATTCTAGGATGGCGTCCATGCTAACTGCTTGTTCAEST: gi|58586909|gb|CF985217.1|CF985217
genomic: TATCTGCAGGATTTGATGCAGCGAGGGGTGACCCTCTGGGTTGTTGTGATgtaagttcgt ... taattaatagGTCACACCTGCTGGATATTCTAGGATGGCGTCCATGCTAACTGCTTGTTCA
EST: TATCTGCAGGATTTGATGCAGCGAGGGGTGACCCTCTGGGTTGTTGTGAT GTCACACCTGCTGGATATTCTAGGATGGCGTCCATGCTAACTGCTTGTTCAEST: gi|29644494|gb|CB649501.1|CB649501
genomic: TATCTGCAGGATTTGATGCAGCGAGGGGTGACCCTCTGGGTTGTTGTGATgtaagttcgt ... taattaatagGTCACACCTGCTGGATATTCTAGGATGGCGTCCATGCTAACTGCTTGTTCA
EST: TATCTGCAGGATTTGATGCAGCGAGGGGTGACCCTCTGGGTTGTTGTGAT GTCACACCTGCTGGATATTCTAGGATGGCGTCCATGCTAACTGCTTGTTCAEST: gi|58665950|gb|CK054636.1|CK054636
genomic: TATCTGCAGGATTTGATGCAGCGAGGGGTGACCCTCTGGGTTGTTGTGATgtaagttcgt ... taattaatagGTCACACCTGCTGGATATTCTAGGATGGCGTCCATGCTAACTGCTTGTTCA
EST: TATCTGCAGGATTTGATGCAGCGAGGGGTGACCCTCTGGGTTGTTGTGAT GTCACACCTGCTGGATATTCTAGGATGGCGTCCATGCTAACTGCTTGTTCA
genomic: TATCTGCAGGATTTGATGCAGCGAGGGGTGACCCTCTGGGTTGTTGTGATgtaagttcgt ... taattaatagGTCACACCTGCTGGATATTCTAGGATGGCGTCCATGCTAACTGCTTGTTCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGCAGAATTTGCTCCAGACATCACCATCATATCTGCAGGATTTGATGCAGCGAGGGGTGACCCTCTGGGTTGTTGTGATgtaagttcgtaagactaacacatgattgttgtctctaaatcatgaacctgtttttttccacttccatttttgcatcattttagaaatctttgatgattct
- - - - - - - - - - - - - - - - CTGCAG