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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGTCAGATTGTAAACCCAACAAGGCCCACACGCACACTAACCTCTCTGGCCCGTGGTGTGCGGAGAGgtatgttacttttctttcacatcaagaattttcagtactgagataatatgatattggcaatcaccttgtccaaccattttcatataatatgctatag

Basic information

species Oryza sativa
transcript LOC_Os06g36770.2
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g36770.2 (Oryza sativa), 5'ss of exon 13
lower sequence: GRMZM2G165418_T01 (Zea mays), 5'ss of exon 13
GCGTCAGATTGTAAACCCAACAAGGCCCACACGCACACTAACCTCTCTGGCCCGTGGTGTGCGGAGAGgtatgttacttttctttcacatcaagaattttcagtactgagataatatgatattggcaatcaccttgtccaaccattttc-atataatatgctatag
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GCGTCAGATTGCAAATCCAGCAAGGCCCACACGGACACTAACTTCTTTTGCCCGTGGTGTTCGGAGAGgt-catttcttatcgtcaacattgact-taattactcctgcaacagtatca-att---attttgttcacgcagccatcaccgacctattctattacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58655643|gb|CK044323.1|CK044323
EST:     AACAAGGCCCACACGCACACTAACCTCTCTGGCCCGTGGTGTGCGGAGAG                         GTGGGGAAAATCAAGGCGTTGATGCCAATGGAAATTCATTTGACTTTTCGA
genomic: AACAAGGCCCACACGCACACTAACCTCTCTGGCCCGTGGTGTGCGGAGAGgtatgttact ... tatgctatagGTGGGGAAAATCAAGGCGTTGATGCCAATGGAAATTCATTTGACTTTTCGA
EST: gi|86483283|gb|CI125916.1|CI125916
EST:     AACAAGGCCCACACGCACACTAACCTCTCTGGCCCGTGGTGTGCGGAGAG                         GTGGGGAAAATCAAGGCGTTGATGCCAATGGAAATTCATTTGACTTTTCGA
genomic: AACAAGGCCCACACGCACACTAACCTCTCTGGCCCGTGGTGTGCGGAGAGgtatgttact ... tatgctatagGTGGGGAAAATCAAGGCGTTGATGCCAATGGAAATTCATTTGACTTTTCGA
EST: gi|58675521|gb|CK064208.1|CK064208
EST:     AACAAGGCCCACACGCACACTAACCTCTCTGGCCCGTGGTGTGCGGAGAG                         GTGGGGAAAATCAAGGCGTTGATGCCAATGGAAATTCATTTGACTTTTCGA
genomic: AACAAGGCCCACACGCACACTAACCTCTCTGGCCCGTGGTGTGCGGAGAGgtatgttact ... tatgctatagGTGGGGAAAATCAAGGCGTTGATGCCAATGGAAATTCATTTGACTTTTCGA
EST: gi|86887746|gb|CI311879.1|CI311879
EST:     CCCGTGGTGTNCGGAAAAG                         GTGGGGAAAAATCAAGGCGTTGAATGCCAATGGAAATTCATTTGACTTTT
genomic: CCCGTGGTGTGCGG-AGAGgtatgttact ... tatgctatagGTGGGG-AAAATCAAGGCGTTG-ATGCCAATGGAAATTCATTTGACTTTT
EST: gi|66913089|gb|CX099937.1|CX099937
EST:     AACAAGGCCCACACGCACACTAACCTCTCTGGCCCGTGGTGTGCGGAGAG                         GTGGGGAAAATCAAGGCGTTGATGCCAATGGAAATTCATTTGACTTTTCGA
genomic: AACAAGGCCCACACGCACACTAACCTCTCTGGCCCGTGGTGTGCGGAGAGgtatgttact ... tatgctatagGTGGGGAAAATCAAGGCGTTGATGCCAATGGAAATTCATTTGACTTTTCGA
EST: gi|29630757|gb|CB635766.1|CB635766
EST:     AACAAGGCCCACACGCACACTAACCTCTTTGGCCCGTGGTGTGCGGAGAG                         GTGGGGAAAATCAAGGCGTTGATGCCAATGGAAATTCATTTGACTTTTCGA
genomic: AACAAGGCCCACACGCACACTAACCTCTCTGGCCCGTGGTGTGCGGAGAGgtatgttact ... tatgctatagGTGGGGAAAATCAAGGCGTTGATGCCAATGGAAATTCATTTGACTTTTCGA
EST: gi|29627088|gb|CB632099.1|CB632099
EST:     AACAAGGCCCCCACGCACACTAACCTCTCTGGCCCGTGGTGTGCGGAGAG                         GTGGGGAAAATCAAGGCGTTGATGCCAATGGAAATTCATTTGACTTTTCGG
genomic: AACAAGGCCCACACGCACACTAACCTCTCTGGCCCGTGGTGTGCGGAGAGgtatgttact ... tatgctatagGTGGGGAAAATCAAGGCGTTGATGCCAATGGAAATTCATTTGACTTTTC-G
EST: gi|218501369|gb|FG965487.1|FG965487
EST:     AACAAGGCCCACACGCACACTAACCTCTCTGGCCCGTGGTGTGCGGAGAG                         GTGGGGAAAATCAAGGCGTTGATGCCAATGGAAATTCATTTGACTTTTCGA
genomic: AACAAGGCCCACACGCACACTAACCTCTCTGGCCCGTGGTGTGCGGAGAGgtatgttact ... tatgctatagGTGGGGAAAATCAAGGCGTTGATGCCAATGGAAATTCATTTGACTTTTCGA
EST: gi|58658882|gb|CK047562.1|CK047562
EST:     AACAAGGCCCACACGCACACTAACCTCTCTGGCCCGTGGTGTGCGGAGAG                         GTGGGGAAAATCAAGGCGTTGATGCCAATGGAAATTCATTTGACTTTTCGA
genomic: AACAAGGCCCACACGCACACTAACCTCTCTGGCCCGTGGTGTGCGGAGAGgtatgttact ... tatgctatagGTGGGGAAAATCAAGGCGTTGATGCCAATGGAAATTCATTTGACTTTTCGA
EST: gi|88411135|gb|CI606354.1|CI606354
EST:     AACAAGGCCCACACGCACACTAACCTCTCTGGCCCGTGGTGTGCGGAGAG                         GTGGGGAAAATCAAGGCGTTGATGCCAATGGAAATTCATTTGACTTTTCGA
genomic: AACAAGGCCCACACGCACACTAACCTCTCTGGCCCGTGGTGTGCGGAGAGgtatgttact ... tatgctatagGTGGGGAAAATCAAGGCGTTGATGCCAATGGAAATTCATTTGACTTTTCGA
EST: gi|29683055|gb|CB679330.1|CB679330
EST:     AACAAGGCCCACACGCACACTAACCTCTCTGGCCCGTGGTGTGCGGAGAG                         GTGGGGAAAATCAAGGCGTTGATGCCAATGGAAATTCATTTGACTTTTCGA
genomic: AACAAGGCCCACACGCACACTAACCTCTCTGGCCCGTGGTGTGCGGAGAGgtatgttact ... tatgctatagGTGGGGAAAATCAAGGCGTTGATGCCAATGGAAATTCATTTGACTTTTCGA
EST: gi|29617518|gb|CB622530.1|CB622530
EST:     ACACGCACACTAACCTCTCTGGCCCGTGGTGTGCGGAGAG                         GTGGGGAAAATCAAGGCGTTGATGCCAATGGAAATTCATTTGACTTTTCGA
genomic: ACACGCACACTAACCTCTCTGGCCCGTGGTGTGCGGAGAGgtatgttact ... tatgctatagGTGGGGAAAATCAAGGCGTTGATGCCAATGGAAATTCATTTGACTTTTCGA
EST: gi|29622204|gb|CB627215.1|CB627215
EST:     AACAAGGCCCACACGCACACTAACCTCTCTGGCCCGTGGTGTGCGGAGAG                         GTGGGGAAAATCAAGGCGTTGATGCCAATGGAAATTCATTTGACTTTTCGA
genomic: AACAAGGCCCACACGCACACTAACCTCTCTGGCCCGTGGTGTGCGGAGAGgtatgttact ... tatgctatagGTGGGGAAAATCAAGGCGTTGATGCCAATGGAAATTCATTTGACTTTTCGA
EST: gi|29644040|gb|CB649047.1|CB649047
EST:     AACAAGGCCCACACGCACACTAACCTCTCTGGCCCGTGGTGTGCGGAGAG                         GTGGGGAAAATCAAGGCGTTGATGCCAATGGAAATTCATTTGACTTTTCGA
genomic: AACAAGGCCCACACGCACACTAACCTCTCTGGCCCGTGGTGTGCGGAGAGgtatgttact ... tatgctatagGTGGGGAAAATCAAGGCGTTGATGCCAATGGAAATTCATTTGACTTTTCGA
EST: gi|55411458|gb|CV723834.1|CV723834
EST:     TCTCTGGCCCGTGGTGTGCGGAGAG                         GTGGGGAAAATCAAGGCGTTGATGCCAATGGAAATTCATTTGACTTTTCGA
genomic: TCTCTGGCCCGTGGTGTGCGGAGAGgtatgttact ... tatgctatagGTGGGGAAAATCAAGGCGTTGATGCCAATGGAAATTCATTTGACTTTTCGA