1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
CATGCAAATGGTGAAAATGCGTGGGTTGGCATTGACGGAAGGAGCGGTGACATTGTTGACATGAAAGAGCGGAAGgttggcctttttctccatgtgcactgctgcatatatcctgcttttgttgtgtacacattaaaacaccatagtattgccttgtcgcag
species | Oryza sativa |
transcript | LOC_Os06g34690.1 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: TTGGCATTGACGGAAGGAGCGGTGACATTGTTGACATGAAAGAGCGGAAG ATCTGGGATTCTTACAGTGTCAAGGCACAAACGTTCAAGACAGCTATCGAGEST: gi|89179006|gb|CI043511.1|CI043511
genomic: TTGGCATTGACGGAAGGAGCGGTGACATTGTTGACATGAAAGAGCGGAAGgttggccttt ... cttgtcgcagATCTGGGATTCTTACAGTGTCAAGGCACAAACGTTCAAGACAGCTATCGAG
EST: AAGAGCGGAAG ATCTGGGATTCTTACAGTGTCAAGGCACAAACGTTCAAGACAGCTATCGAGEST: gi|8527364|gb|AU092179.1|AU092179
genomic: AAGAGCGGAAGgttggccttt ... cttgtcgcagATCTGGGATTCTTACAGTGTCAAGGCACAAACGTTCAAGACAGCTATCGAG
EST: TTGGCATTGACGGAAGGAGCGGTGACATTGTTGACATGAAAGAGCGGAAG ATCTGGGATTCTTACAGTNTCAAGGCACAAACGTTCAAGACAGCTATCGAGEST: gi|89185732|gb|CI047601.1|CI047601
genomic: TTGGCATTGACGGAAGGAGCGGTGACATTGTTGACATGAAAGAGCGGAAGgttggccttt ... cttgtcgcagATCTGGGATTCTTACAGTGTCAAGGCACAAACGTTCAAGACAGCTATCGAG
EST: TGAAAGAGCGGAAG ATCTGGGATTCTTACAGTGTCAAGGCACAAACGTTCAAGACAGCTATCGAGEST: gi|86481791|gb|CI124424.1|CI124424
genomic: TGAAAGAGCGGAAGgttggccttt ... cttgtcgcagATCTGGGATTCTTACAGTGTCAAGGCACAAACGTTCAAGACAGCTATCGAG
EST: TTGGCATTGACGGAAGGAGCGGTGACATTGTTGACATGAAAGAGCGGAAG ATCTGGGATTCTTACAGTGTCAAGGCACAAACGTTCAAGACAGCTATCGAGEST: gi|8527533|gb|AU092348.1|AU092348
genomic: TTGGCATTGACGGAAGGAGCGGTGACATTGTTGACATGAAAGAGCGGAAGgttggccttt ... cttgtcgcagATCTGGGATTCTTACAGTGTCAAGGCACAAACGTTCAAGACAGCTATCGAG
EST: TTGGCATTGACGGAAGGANCGGTGACATTGTTGACATGAAAGAGCGGAAG ATCTGGGATTCTTACAGTGTCAAGGCACAAACGTTCAAGACAGCTATCGAGEST: gi|218482787|gb|FG945649.1|FG945649
genomic: TTGGCATTGACGGAAGGAGCGGTGACATTGTTGACATGAAAGAGCGGAAGgttggccttt ... cttgtcgcagATCTGGGATTCTTACAGTGTCAAGGCACAAACGTTCAAGACAGCTATCGAG
EST: TTGGCATTGACGGAAGGAGCGGTGACATTGTTGACATGAAAGAGCGGAAG ATCTGGGATTCTTACAGTGTCAAGGCACAAACGTTCAAGACAGCTATCGAGEST: gi|27576407|gb|CA999101.1|CA999101
genomic: TTGGCATTGACGGAAGGAGCGGTGACATTGTTGACATGAAAGAGCGGAAGgttggccttt ... cttgtcgcagATCTGGGATTCTTACAGTGTCAAGGCACAAACGTTCAAGACAGCTATCGAG
EST: TTGGCATTGACGGAAGGAGCGGTGACATTGTTGACATGAAAGAGCGGAAG ATCTGGGATTCTTACAGTGTCAAGGCACAAACGTTCAAGACAGCTATCGAGEST: gi|29661338|gb|CB657613.1|CB657613
genomic: TTGGCATTGACGGAAGGAGCGGTGACATTGTTGACATGAAAGAGCGGAAGgttggccttt ... cttgtcgcagATCTGGGATTCTTACAGTGTCAAGGCACAAACGTTCAAGACAGCTATCGAG
EST: TTGGCATTGACGGAAGGAGCGGTGACATTGTTGACATGAAAGAGCGGAAG ATCTGGGATTCTTACAGTGTCAAGGCACAAACGTTCAAGACAGCTATCGAGEST: gi|218479881|gb|FG966071.1|FG966071
genomic: TTGGCATTGACGGAAGGAGCGGTGACATTGTTGACATGAAAGAGCGGAAGgttggccttt ... cttgtcgcagATCTGGGATTCTTACAGTGTCAAGGCACAAACGTTCAAGACAGCTATCGAG
EST: TTGGCATTGACGGAAGGAGCGGTGACATTGTTGACATGAAAGAGCGGAAG ATCTGGGATTCTEST: gi|25806437|gb|CA762398.1|CA762398
genomic: TTGGCATTGACGGAAGGAGCGGTGACATTGTTGACATGAAAGAGCGGAAGgttggccttt ... cttgtcgcagATCTGGGATTCT
EST: TTGGCATTGACGGAAGGAGCGGTGACATTGTTGACATGAAAGAGCGGAAG ATCTGGGATTCTTACAGTGTCAAGGCGCAAACGTTCAAGACAGCTATCGAG
genomic: TTGGCATTGACGGAAGGAGCGGTGACATTGTTGACATGAAAGAGCGGAAGgttggccttt ... cttgtcgcagATCTGGGATTCTTACAGTGTCAAGGCACAAACGTTCAAGACAGCTATCGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATGCAAATGGTGAAAATGCGTGGGTTGGCATTGACGGAAGGAGCGGTGACATTGTTGACATGAAAGAGCGGAAGgttggcctttttctccatgtgcactgctgcatatatcctgcttttgttgtgtacacattaaaacaccatagtattgccttgtcgcag
- - - - - - - - - - - - - - - - - - - AAGGAG