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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATCCTGTGTGGACAAGTTGTTGAGCCACATCACATTGTCAATGATCTCATATACTGTGAATGCATCAAATATCGACCACAAGTTGGAATAAACATAGAGgtttgttctaaccaactttgtttaaaacctgattccagatgcagatctactactactaagatattatttacatttacatttcacctaataacagtgataattttgcagagacaactaactctatattgcaacatgattcccttttacctaatacattttcatttcatttattcag

Basic information

species Oryza sativa
transcript LOC_Os06g28060.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g28060.3 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G319760_T01 (Zea mays), 5'ss of exon 12
TATCCTGTGTGGACAAGTTGTTGAGCCACATCACATTGTCAATGATCTCATATACTGTGAATGCATCAAATATCGACCACAAGTTGGAATAAACATAGAGgtttgttctaaccaactttgtttaaaacctgattccagatgcagatctactactactaagatattatttacatttacatttcacctaataacagtgataattttgcagagacaactaactctatattgcaacatgattcccttttacctaatacattttcatttcatttattcag
 ||| ||||||||| || |||||| |||||| |  |||||||||||||||||||| ||||||| |||| |||||||||||| |||  | ||| || ||||||||||||||  | |||             | | |  | | |   |   |  ||    | |  ||| | ||    | |   |   |  |  ||||||  |                                                                           
CATCTTGTGTGGACGAGCTGTTGAACCACATTATGTTGTCAATGATCTCATATACCGTGAATGTATCATATATCGACCACATGTTCAAGTAACCACAGAGgtttgttctacacgactaatgccccgtttggttccttggttcctttagtcacctgactaaactttagtgactaaaataccccgtttggttccagtgacta---------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29687744|gb|CB684019.1|CB684019
EST:     AATGCATCAAATATCGCCCTCAAGTTGGAATAAACATAGAG                         GTTGACGTTATTACTACAATTGGCTACTTAAGAGGTGCTCCAAAACTGGAT
genomic: AATGCATCAAATATCGACCACAAGTTGGAATAAACATAGAGgtttgttcta ... atttattcagGTTGACGTTATTACTACAATTGGCTACTTAAGAGGTGCTCCAAAACTGGAT
EST: gi|218482730|gb|FG951689.1|FG951689
EST:     TATACTGTGAATGCATCAAATATCGACCACAAGTTGGAATAAACATAGAG                         GTTGACGTTATTACTACAATTGGCTACTTAAGAGGTGCTCCAAAACTGGAT
genomic: TATACTGTGAATGCATCAAATATCGACCACAAGTTGGAATAAACATAGAGgtttgttcta ... atttattcagGTTGACGTTATTACTACAATTGGCTACTTAAGAGGTGCTCCAAAACTGGAT
EST: gi|38476867|gb|CF961000.1|CF961000
EST:     TATACTGTGAATGCATCAAATATCGACCACAAGTTGGAATAAACATAGAG                         GTTGACGTTATTAC
genomic: TATACTGTGAATGCATCAAATATCGACCACAAGTTGGAATAAACATAGAGgtttgttcta ... atttattcagGTTGACGTTATTAC