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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGGCAACCTCGCTGCTCCTGTGGAAGAATGGACCGTTGGTGGAACTGCATTGACATCGTTGATGGATGTTGAGAGGAGGCACGgtaggtttctacagttccgttgtttgcacttggagattagctagctatgtttcattaaatttcttttgaccgtttattcaaatacctactatgtgattaa...

Basic information

species Oryza sativa
transcript LOC_Os06g13810.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g13810.1 (Oryza sativa), 5'ss of exon 13
lower sequence: GRMZM2G143862_T01 (Zea mays), 5'ss of exon 6
GTTGGCAACCTCGCTGCTCCTGTGGAAGAATGGACCGTTGGTGGAACTGCATTGACATCGTTGATGGATGTTGAGAGGAGGCACGgtaggtttctacagttccgttgtttgcacttggagattagctagctatgtttcattaa-atttcttttgaccgtttattcaaatacctactatgtgattaa
||||||||||| || ||||| || ||||||||||| ||||||||||| |||||||||||  |||||||||||||||||||||||||||  |||||    |  | |||||  ||  ||  |  ||     ||||| |  |  |  |||  | || ||  ||||||||| || | || |  ||  | |
GTTGGCAACCTTGCGGCTCCAGTAGAAGAATGGACTGTTGGTGGAACAGCATTGACATCACTGATGGATGTTGAGAGGAGGCACGgtaattttcttgcttcactttgttaccaactgatggctactctactatgctctagcagcattcttctttacactttattcaagtagcaacca-atgtgtga

upper sequence: LOC_Os06g13810.1 (Oryza sativa), 5'ss of exon 13
lower sequence: GRMZM2G059151_T01 (Zea mays), 5'ss of exon 13
GTTGGCAACCTCGCTGCTCCTGTGGAAGAATGGACCGTTGGTGGAACTGCATTGACATCGTTGATGGATGTTGAGAGGAGGCACGgtaggtttctacagttccgttgtttgcacttggagattagctagctatgtttcattaaatttcttttgaccgtttattcaa---atacctactatgtgattaa--------------------------------------------------------------------------------------
||||||||||| || ||||| || ||||||||||| ||||||||||| ||||| |||||  |||||||||||||||||||||||||||  |||||    |  | | |||| ||  ||  |  ||     |||||||  | | |  ||||| |    ||| ||||||   ||   |   |||  |||                                                                                        
GTTGGCAACCTTGCGGCTCCAGTTGAAGAATGGACTGTTGGTGGAACAGCATTAACATCACTGATGGATGTTGAGAGGAGGCACGgtaattttcttgcttcacctcgtttccaactgatggctactctactatgttctagttacattcttctcgatgttcattcaaccaatgtgtgacatgccattcttgttccttttttcggttgattagcatttatactttggttataatttgtgccggagtgtaacttttgacgttgttctctgcaatcag

upper sequence: LOC_Os06g13810.1 (Oryza sativa), 5'ss of exon 13
lower sequence: GLYMA17G01360.1 (Glycine max), 5'ss of exon 11
GTTGGCAACCTCGCTGCTCCTGTGGAAGAATGGACCGTTGGTGGAACTGCATTGACATCGTTGATGGATGTTGAGAGGAGGCACGgtaggtt-tctac-agttccgttg-tttgcacttggag--attagctagctatgt-ttcattaaatttc-ttttgaccgtttattcaaatacctact---atgtgattaa-----------------------------------------
||||| ||  |   ||||||||| ||||||||||| ||||||||||||||| | || || |||||||| || |||||||| || |||| ||  ||||   |  |  ||| ||||| |    |   |||  ||   | | | ||||||| ||  | ||||| |  | | ||   | |  || |   ||||| ||                                           
GTTGGTAATTTGTGTGCTCCTGTAGAAGAATGGACTGTTGGTGGAACTGCACTCACTTCATTGATGGACGTGGAGAGGAGACATGgtatgtgatctattggagcttttgctttgccccaatacctattttctgaatgtttattcattacatgacattttgtctctatgttgttacatttatttgaatgtgctttctctgatgttctgctattaatgaattgtgattttctttttag

upper sequence: LOC_Os06g13810.1 (Oryza sativa), 5'ss of exon 13
lower sequence: GLYMA07G39380.2 (Glycine max), 5'ss of exon 13
GTTGGCAACCTCGCTGCTCCTGTGGAAGAATGGACCGTTGGTGGAACTGCATTGACATCGTTGATGGATGTTGAGAGGAGGCACGgtaggt-------ttctacagttccgttg-tttgcacttggagattagctagctatgttt-----cattaaatttc-ttttgaccgtttattcaaatacctact---atgtgattaa-------------------------------------------
||||| ||  |   ||||||||| ||||||||||| ||||||||||||||| | || || |||||||| || |||||||| || ||||  |       |    |||  |  ||| ||||| |    | |     |  |||  |||     ||||| ||  | ||||| |    | ||   | |  || |   ||||| ||                                             
GTTGGTAATTTATGTGCTCCTGTAGAAGAATGGACTGTTGGTGGAACTGCACTCACTTCATTGATGGACGTGGAGAGGAGACATGgtatatattgtgatctagcagagcttttgctttgccccaatatacctattttctaaatttttattcattacatgacattttgtctccatgttgttacatttatttgaatgtgctttctctgatgttctgctgttaatgaattgtgtgattttctttttag

upper sequence: LOC_Os06g13810.1 (Oryza sativa), 5'ss of exon 13
lower sequence: GLYMA15G11890.1 (Glycine max), 5'ss of exon 13
GTTGGCAACCTCGCTGCTCCTGTGGAAGAATGGACCGTTGGTGGAACTGCATTGACATCGTTGATGGATGTTGAGAGGAGGCACGgtaggtttctacagttccgttgtttgcacttggagattagctagctatgtttcattaaatttcttttgaccgtttattcaaatacctactatgtgattaa-----------
|||| |||  |   |||||| || ||||||||||| ||||||||||||||| | || ||  |||||||||| ||||||||||| ||||       ||| || | |  ||   || |   | ||  |   | ||   | | ||  ||  || | |  ||| || |||    |||   |||   | |           
GTTGCCAATTTATGTGCTCCGGTAGAAGAATGGACTGTTGGTGGAACTGCACTCACCTCACTGATGGATGTGGAGAGGAGGCATGgta------cacactttcatctttgagaccttatgctttacc--ccat---tgactattttctttattagtgttcatgcaatactctatagtgttgctgatgtattttgat

upper sequence: LOC_Os06g13810.1 (Oryza sativa), 5'ss of exon 13
lower sequence: GLYMA09G01050.1 (Glycine max), 5'ss of exon 13
GTTGGCAACCTCGCTGCTCCTGTGGAAGAATGGACCGTTGGTGGAACTGCATTGACATCGTTGATGGATGTTGAGAGGAGGCACGgtaggtttctacagttccgttgtt-tgcacttggagattagctagctatgtttc--attaaatttcttttgaccgtttattcaaatacc-tactatgtgattaa
||||| ||  |   |||||| ||  |||||||||| ||||||||||||||| | || ||  |||||||||| ||||||||||| ||||      |  |  |  |      ||  |||  |    || |  |||| ||    ||||   ||| |  ||   | ||||    | |  || ||| |   |  
GTTGGGAATTTATGTGCTCCAGTAAAAGAATGGACTGTTGGTGGAACTGCACTCACCTCAATGATGGATGTGGAGAGGAGGCATGgtacacactttgatctttgggaccgtgtgcttt-accccag-tgactattttctgaattagtgttcatgcgatactctattgtgttgctgtagtattttgat--

upper sequence: LOC_Os06g13810.1 (Oryza sativa), 5'ss of exon 13
lower sequence: AT4G04040.1 (Arabidopsis thaliana), 5'ss of exon 13
GTTGGCAACCTCGCTGCTCCTGTGGAAGAATGGACCGTTGGTGGAACTGCATTGACATCGTTGATGGATGTTGAGAGGAGGCACGgtaggtttctacagttccgttgtttgcacttggagattagctagctatgtttcattaaatttcttttgaccgtttattcaaatacctactatgtgattaa
||||| ||| | ||||||||||| ||||| ||||| |||||||| |||||| |||| |||||||||||||||||||| || || ||||   |    |  | |  | |  || | |    ||| || |   |||  ||    ||  |||| ||     | | ||  |                   
GTTGGAAACTTGGCTGCTCCTGTTGAAGAGTGGACAGTTGGTGGTACTGCACTGACTTCGTTGATGGATGTTGAGAGAAGACATGgtaatataagtcgatactatcg--tgaagtgtttgataagatta-tattcttttccaacattctcttttttttatgttgcag------------------

upper sequence: LOC_Os06g13810.1 (Oryza sativa), 5'ss of exon 13
lower sequence: AT1G12000.1 (Arabidopsis thaliana), 5'ss of exon 13
GTTGGCAACCTCGCTGCTCCTGTGGAAGAATGGACCGTTGGTGGAACTGCATTGACATCGTTGATGGATGTTGAGAGGAGGCACGgtaggtttctacagttccgttgtttgcacttggaga---ttagctagctatgtttcattaaatttcttttgaccgtttattcaaatacctactatgtgattaa
||||| ||| | ||||||||||||||||||||||| || ||||| |||||  | ||| | ||||||||||| |||||||| |||||||      || |  ||  |       |||  || |   || |  | |||  | | |  ||||     ||||   |  | |   |                  
GTTGGGAACTTGGCTGCTCCTGTGGAAGAATGGACTGTAGGTGGGACTGCTCTCACAGCCTTGATGGATGTCGAGAGGAGACACGgtacagaaatataaatcaataaagcttactaagacacattttgaaatctagatattaaaaaatcagagttgatt-tcaacttgcag-----------------

upper sequence: LOC_Os06g13810.1 (Oryza sativa), 5'ss of exon 13
lower sequence: Vv10s0116g00360.t01 (Vitis vinifera), 5'ss of exon 13
GTTGGCAACCTCGCTGCTCCTGTGGAAGAATGGACCGTTGGTGGAACTGCATTGACATCGTTGATGGATGTTGAGAGGAGGCACGgtaggtt--tctacagttccgttgtttgcacttggagattagctagctatgtttcattaaatttcttttgaccgtttattcaaata-cctactatgtgattaa
||||| || ||  ||||||| || ||||||||||| |||||||||||||| ||||| || || |||||||| |||||||| || |||| | |   ||    ||      | |    ||| ||||  |  |    | ||     ||| |||||||  || ||       |||  ||   |  | ||   
GTTGGGAATCTGTCTGCTCCAGTTGAAGAATGGACTGTTGGTGGAACTGCCTTGACTTCATTAATGGATGTGGAGAGGAGACATGgtatgatagcctctctttttcccatctcactttgcagat--gtgattcctattatggaaaacttcttttctcctttggaggctatagtctggcactttatac-

upper sequence: LOC_Os06g13810.1 (Oryza sativa), 5'ss of exon 13
lower sequence: Vv12s0059g01220.t01 (Vitis vinifera), 5'ss of exon 13
GTTGGCAACCTCGCTGCTCCTGTGGAAGAATGGACCGTTGGTGGAACTGCATTGACATCGTTGATGGATGTTGAGAGGAGGCACGgtaggtttctacagttccgttgtttgcacttggagattagctagctatgtttcattaaatttcttttgaccgtttattcaaatacctactatgtgattaa
|| || ||  | | |||||| || ||||||||||| || || ||||| |||||||| || ||||||||||| |||||||| || |||   || |||| | | |  |  |  || |      |   ||   |||  | || | |  |    ||     ||| ||| ||  | ||| || ||     
GTGGGAAATTTGGGTGCTCCAGTTGAAGAATGGACAGTGGGAGGAACGGCATTGACTTCTTTGATGGATGTGGAGAGGAGACATGgt---ttgctaccgcttcacttatctcatt-----gtc--cttattatcctccaatcatatcaggttttttattttttctaaaccttaccatttggcag-

upper sequence: LOC_Os06g13810.1 (Oryza sativa), 5'ss of exon 13
lower sequence: EFJ12684 (Selaginella moellendorffii), 5'ss of exon 13
GTTGGCAACCTCGCTGCTCCTGTGGAAGAATGGACCGTTGGTGGAACTGCATTGACATCGTTGATGGATGTTGAGAGGAGGCACGgtaggttt----ctacagttccgttgtttgcacttggagattagctagctatgtttcattaaatttcttttgaccgtttattcaaatacctactatgtgattaa
|| || ||  |  |  |  ||    |||| |||||||| || || || ||||||||||| |||||||||||||||||  ||   ||||    |    || ||  |||| ||  |   ||   |  ||  |    |                                                      
GTGGGGAATTTGTCAACCTCTTCAAAAGACTGGACCGTGGGAGGGACGGCATTGACATCATTGATGGATGTTGAGAGACGGAGAGgtaaaactgatacttcaagtccgctgcgt---ctcacatgtttccctcgtgcag--------------------------------------------------

upper sequence: LOC_Os06g13810.1 (Oryza sativa), 5'ss of exon 13
lower sequence: EFJ13842 (Selaginella moellendorffii), 5'ss of exon 13
GTTGGCAACCTCGCTGCTCCTGTGGAAGAATGGACCGTTGGTGGAACTGCATTGACATCGTTGATGGATGTTGAGAGGAGGCACGgtaggtttctacagttccgttgtttgcacttggagattagctagctatgtttcattaaatttcttttgaccgtttattcaaatacctactatgtgattaa
|| || ||  |  | ||  ||    |||| ||||| || || || || ||||||||||| |||||||||||||||||  ||   ||||    |  | | |||    ||  ||   ||    | |   |  | |   || |  |                                          
GTGGGAAATTTGTCAGCCTCTTCAAAAGACTGGACTGTGGGAGGGACGGCATTGACATCATTGATGGATGTTGAGAGACGGAGAGgtaaaactg-atacttcaa--gtccgc---tgcgtctcacacatgtttccctcgtgcag-----------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|89184067|gb|CI046632.1|CI046632
EST:     GGATGTTGAGAGGAGGCACG                         GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG
genomic: GGATGTTGAGAGGAGGCACGgtaggtttct ... ctgcaatcagGAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG
EST: gi|88503085|gb|CI430591.1|CI430591
EST:     TTGATGAATGTTGAGAGGAGGCACG                         GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTAG-CG
genomic: TTGATGGATGTTGAGAGGAGGCACGgtaggtttct ... ctgcaatcagGAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTT-GACG
EST: gi|88443149|gb|CI546721.1|CI546721
EST:     TTGAGAGGAGGCACG                         GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG
genomic: TTGAGAGGAGGCACGgtaggtttct ... ctgcaatcagGAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG
EST: gi|88248905|gb|CI247989.1|CI247989
EST:     CGTTGGTGGAACTGCATTGACATCGTTGATGGATGTTGAGAGGAGGCACG                         GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG
genomic: CGTTGGTGGAACTGCATTGACATCGTTGATGGATGTTGAGAGGAGGCACGgtaggtttct ... ctgcaatcagGAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG
EST: gi|89180255|gb|CI044534.1|CI044534
EST:     CGTTGGTGGAACTGCATTGACATCGTTGATGGATGTTGAGAGGAGGCACG                         GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG
genomic: CGTTGGTGGAACTGCATTGACATCGTTGATGGATGTTGAGAGGAGGCACGgtaggtttct ... ctgcaatcagGAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG
EST: gi|86255558|gb|CI065235.1|CI065235
EST:     CGTTGGTGGAACTGCATTGACATCGTTGATGGATGTTGAGAGGAGGCACG                         GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG
genomic: CGTTGGTGGAACTGCATTGACATCGTTGATGGATGTTGAGAGGAGGCACGgtaggtttct ... ctgcaatcagGAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG
EST: gi|88298292|gb|CI561085.1|CI561085
EST:     ATGTTGAGAGGAGGCACG                         GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG
genomic: ATGTTGAGAGGAGGCACGgtaggtttct ... ctgcaatcagGAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG
EST: gi|88384752|gb|CI556630.1|CI556630
EST:     GTTGAGAGGAGGCACG                         GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG
genomic: GTTGAGAGGAGGCACGgtaggtttct ... ctgcaatcagGAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG
EST: gi|89162035|gb|CI103571.1|CI103571
EST:     GAGAGGAGGCACG                         GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG
genomic: GAGAGGAGGCACGgtaggtttct ... ctgcaatcagGAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG
EST: gi|88289703|gb|CI522836.1|CI522836
EST:     CGTTGGTGGAACTGCATTGACATCNTTGATGGATGTTGAGAGGAGGCACG                         GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTG-AACNTTGACG
genomic: CGTTGGTGGAACTGCATTGACATCGTTGATGGATGTTGAGAGGAGGCACGgtaggtttct ... ctgcaatcagGAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAAC-TTGACG
EST: gi|86488059|gb|CI130692.1|CI130692
EST:     CGTTGGTGGAACTGCATTGACATCGTTGATGGATGTTGAGAGGAGGCACG                         GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG
genomic: CGTTGGTGGAACTGCATTGACATCGTTGATGGATGTTGAGAGGAGGCACGgtaggtttct ... ctgcaatcagGAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG
EST: gi|88957467|gb|CI095408.1|CI095408
EST:     CGTTGGTGGAACTGCATTGATATCGTTGATGGATGTTGAGAGGAGGCACG                         GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG
genomic: CGTTGGTGGAACTGCATTGACATCGTTGATGGATGTTGAGAGGAGGCACGgtaggtttct ... ctgcaatcagGAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG
EST: gi|218492354|gb|FG951898.1|FG951898
EST:     CGTTGGTGGAACTGCATTGACATCGTTGATGGATGTTGAGAGGAGGCACG                         GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG
genomic: CGTTGGTGGAACTGCATTGACATCGTTGATGGATGTTGAGAGGAGGCACGgtaggtttct ... ctgcaatcagGAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG
EST: gi|89179882|gb|CI044161.1|CI044161
EST:     CGTTGGTGGAACTGCATTGACATCGTTGATGGATGTTGAGAGGAGGCACG                         GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG
genomic: CGTTGGTGGAACTGCATTGACATCGTTGATGGATGTTGAGAGGAGGCACGgtaggtttct ... ctgcaatcagGAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG
EST: gi|58677751|gb|CK066438.1|CK066438
EST:     CGTTGGTGGAACTGCATTGACATCGTTGATGGATGTTGAGAGGAGGCACG                         GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG
genomic: CGTTGGTGGAACTGCATTGACATCGTTGATGGATGTTGAGAGGAGGCACGgtaggtttct ... ctgcaatcagGAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG
EST: gi|88247475|gb|CI247324.1|CI247324
EST:     CGTTGGTGGAACTGCATTGACATCGTTGATGGATGTTGAGAGGAGGCACG                         GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG
genomic: CGTTGGTGGAACTGCATTGACATCGTTGATGGATGTTGAGAGGAGGCACGgtaggtttct ... ctgcaatcagGAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG
EST: gi|88438790|gb|CI546272.1|CI546272
EST:     TGTTGAGAGGAGGCACG                         GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG
genomic: TGTTGAGAGGAGGCACGgtaggtttct ... ctgcaatcagGAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG
EST: gi|86486432|gb|CI129065.1|CI129065
EST:     TGGAACTGCATTGACATCGTTGATGGATCTTGAGAGGAGGCACG                         GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG
genomic: TGGAACTGCATTGACATCGTTGATGGATGTTGAGAGGAGGCACGgtaggtttct ... ctgcaatcagGAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG
EST: gi|29678699|gb|CB674974.1|CB674974
EST:     CGTTGGTGGAACTGCATTGACATCGTTGATGGATGTTGAGAGGAGGCACG                         GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG
genomic: CGTTGGTGGAACTGCATTGACATCGTTGATGGATGTTGAGAGGAGGCACGgtaggtttct ... ctgcaatcagGAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG
EST: gi|29632620|gb|CB637629.1|CB637629
EST:     CGTTGGTGGAACTGCATTGACATCGTTGATGGATGTTGAGAGGAGGCACG                         GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG
genomic: CGTTGGTGGAACTGCATTGACATCGTTGATGGATGTTGAGAGGAGGCACGgtaggtttct ... ctgcaatcagGAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG
EST: gi|86435722|gb|CI106955.1|CI106955
EST:     CGTTGGTGGAACTGCATTGACATCGTTGATGGATGTTGAGAGGAGGCACG                         GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG
genomic: CGTTGGTGGAACTGCATTGACATCGTTGATGGATGTTGAGAGGAGGCACGgtaggtttct ... ctgcaatcagGAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG
EST: gi|89194206|gb|CI116643.1|CI116643
EST:     CGTTGGTGGAACTGCATTGACATCGTTGATGGATGTTGAGAGGAGGCACG                         GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG
genomic: CGTTGGTGGAACTGCATTGACATCGTTGATGGATGTTGAGAGGAGGCACGgtaggtttct ... ctgcaatcagGAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG
EST: gi|89198488|gb|CI007548.1|CI007548
EST:     CGTTGGTGGAACTGCATTGACATCGTTGATGGATGTTGAGAGGAGGCACG                         GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG
genomic: CGTTGGTGGAACTGCATTGACATCGTTGATGGATGTTGAGAGGAGGCACGgtaggtttct ... ctgcaatcagGAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG
EST: gi|88849729|gb|CI089835.1|CI089835
EST:     CGTTGGTGGAACTGCATTGACATCGTTGATGGATGTTGAGAGGAGGCACG                         GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG
genomic: CGTTGGTGGAACTGCATTGACATCGTTGATGGATGTTGAGAGGAGGCACGgtaggtttct ... ctgcaatcagGAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG
EST: gi|88957444|gb|CI095385.1|CI095385
EST:     CGTTGGTGGAACTGCATTGATATCGTTGATGGATGTTGAGAGGAGGCACG                         GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG
genomic: CGTTGGTGGAACTGCATTGACATCGTTGATGGATGTTGAGAGGAGGCACGgtaggtttct ... ctgcaatcagGAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG
EST: gi|13806214|gb|AU181418.1|AU181418
EST:     ATGGATGTTGAGAGGAGGCACG                         GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG
genomic: ATGGATGTTGAGAGGAGGCACGgtaggtttct ... ctgcaatcagGAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG
EST: gi|88205596|gb|CI205445.1|CI205445
EST:     GTTGGTGGCACTGCATTGACATCGTTGATGGAT-TTGTAGAGGAGGCACG                         GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAAC-TGTACG
genomic: GTTGGTGGAACTGCATTGACATCGTTGATGGATGTTG-AGAGGAGGCACGgtaggtttct ... ctgcaatcagGAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTG-ACG
EST: gi|58687019|gb|CK075706.1|CK075706
EST:     CGTTGGTGGAACTGCATTGACATCGTTGATGGATGTTGAGAGGAGGCACG                         GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG
genomic: CGTTGGTGGAACTGCATTGACATCGTTGATGGATGTTGAGAGGAGGCACGgtaggtttct ... ctgcaatcagGAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG
EST: gi|89180424|gb|CI044703.1|CI044703
EST:     CGTTGGTGGAACTGCATTGACATCGTTGATGGATGTTGAGAGGAGGCACG                         GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG
genomic: CGTTGGTGGAACTGCATTGACATCGTTGATGGATGTTGAGAGGAGGCACGgtaggtttct ... ctgcaatcagGAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG
EST: gi|86261017|gb|CI066692.1|CI066692
EST:     CGTTGGTGGAACTGCATTGACATCGTTGATGGATGTTGAGAGGAGGCACG                         GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG
genomic: CGTTGGTGGAACTGCATTGACATCGTTGATGGATGTTGAGAGGAGGCACGgtaggtttct ... ctgcaatcagGAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG
EST: gi|29689205|gb|CB685480.1|CB685480
EST:     CGTTGGTGGAACTGCATTGACATCGTTGATGGATGTTGAGAGGAGGCACG                         GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG
genomic: CGTTGGTGGAACTGCATTGACATCGTTGATGGATGTTGAGAGGAGGCACGgtaggtttct ... ctgcaatcagGAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG
EST: gi|58684244|gb|CK072931.1|CK072931
EST:     CGTTGGTGGAACTGCATTGACATCGTTGATGGATGTTGAGAGGAGGCACG                         GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG
genomic: CGTTGGTGGAACTGCATTGACATCGTTGATGGATGTTGAGAGGAGGCACGgtaggtttct ... ctgcaatcagGAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG
EST: gi|89183317|gb|CI045882.1|CI045882
EST:     ATGGATGTTGAGAGGAGGCACG                         GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG
genomic: ATGGATGTTGAGAGGAGGCACGgtaggtttct ... ctgcaatcagGAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG
EST: gi|88850841|gb|CI096231.1|CI096231
EST:     CGTTGGTGGAACTGCATTGACATCGTTGATGGATGTTGAGAGGAGGCACG                         GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG
genomic: CGTTGGTGGAACTGCATTGACATCGTTGATGGATGTTGAGAGGAGGCACGgtaggtttct ... ctgcaatcagGAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG
EST: gi|88437922|gb|CI536081.1|CI536081
EST:     GGATGTTGAGAGGAGGCACG                         GAAAGTACAAGCCA-TAGATCAAGAAGGCTATGGTGGAACTTTAGCG
genomic: GGATGTTGAGAGGAGGCACGgtaggtttct ... ctgcaatcagGAAAGTACAAGCCAGT-GATCAAGAAGGCTATGGTGGAACTTGA-CG
EST: gi|55431802|gb|CV728921.1|CV728921
EST:     CGTTGGTGGAACTGCATTGACATCGTTGATGGATGTTGAGAGGAGGCACG                         GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG
genomic: CGTTGGTGGAACTGCATTGACATCGTTGATGGATGTTGAGAGGAGGCACGgtaggtttct ... ctgcaatcagGAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG
EST: gi|88246487|gb|CI246336.1|CI246336
EST:     CGTTGGTGGAACTGCATTGACATCGTTGATGGATGTTGAGAGGAGGCACG                         GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG
genomic: CGTTGGTGGAACTGCATTGACATCGTTGATGGATGTTGAGAGGAGGCACGgtaggtttct ... ctgcaatcagGAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG
EST: gi|88434872|gb|CI549069.1|CI549069
EST:     TGATGGATGTTGAGAGGAGGCACG                         GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG
genomic: TGATGGATGTTGAGAGGAGGCACGgtaggtttct ... ctgcaatcagGAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG
EST: gi|86433428|gb|CI093771.1|CI093771
EST:     CGTTGGTGGAACTGCATTGACATCGTTGATGGATGTTGAGAGGAGGCACG                         GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG
genomic: CGTTGGTGGAACTGCATTGACATCGTTGATGGATGTTGAGAGGAGGCACGgtaggtttct ... ctgcaatcagGAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG
EST: gi|33687066|gb|CF315305.1|CF315305
EST:     CGTTGGTGGAACTGCATTGACATCGTTGATGGATGTTGAGAGGAGGCACG                         GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG
genomic: CGTTGGTGGAACTGCATTGACATCGTTGATGGATGTTGAGAGGAGGCACGgtaggtttct ... ctgcaatcagGAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG
EST: gi|88849084|gb|CI087606.1|CI087606
EST:     CGTTGGTGGAACTGCATTGACATCGTTGATGGATGTTGAGAGGAGGCACG                         GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG
genomic: CGTTGGTGGAACTGCATTGACATCGTTGATGGATGTTGAGAGGAGGCACGgtaggtttct ... ctgcaatcagGAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG
EST: gi|58672321|gb|CK061007.1|CK061007
EST:     CGTTGGTGGAACTGCATTGACATCGTTGATGGATGTTGAGAGGAGGCACG                         GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG
genomic: CGTTGGTGGAACTGCATTGACATCGTTGATGGATGTTGAGAGGAGGCACGgtaggtttct ... ctgcaatcagGAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG
EST: gi|88292068|gb|CI532660.1|CI532660
EST:     GCATTGACATCGTTGATGGATGTTGAGAGGAGGCACG                         GGAAGTACAAGCCAGTGATCAAGGAGGCTATGGTGGAACTTGACG
genomic: GCATTGACATCGTTGATGGATGTTGAGAGGAGGCACGgtaggtttct ... ctgcaatcagGAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG
EST: gi|88247683|gb|CI247532.1|CI247532
EST:     CGTTGGTGGAACTGCATTGACATCGTTGATGGATGTTGAGAGGAGGCACG                         GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG
genomic: CGTTGGTGGAACTGCATTGACATCGTTGATGGATGTTGAGAGGAGGCACGgtaggtttct ... ctgcaatcagGAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG
EST: gi|428916|gb|D25072.1|D25072
EST:     CGTTGGTGGAACTGCATTGACATCGTTGATGGATGTTGAGAGGAGGCACG                         GAAAGTACAAGCCAGTTATCAAGAAGGCTATGGTGGA-CTTGACG
genomic: CGTTGGTGGAACTGCATTGACATCGTTGATGGATGTTGAGAGGAGGCACGgtaggtttct ... ctgcaatcagGAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG
EST: gi|218497895|gb|FG966087.1|FG966087
EST:     CGTTGGTGGAACTGCATTGACATCGTTGATGGATGTTGAGAGGAGGCACG                         GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG
genomic: CGTTGGTGGAACTGCATTGACATCGTTGATGGATGTTGAGAGGAGGCACGgtaggtttct ... ctgcaatcagGAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG
EST: gi|8527563|gb|AU092378.1|AU092378
EST:     CGTTGGTGGAACTGCATTGACATCGTTGATGGATGTTGAGAGGAGGCACG                         GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG
genomic: CGTTGGTGGAACTGCATTGACATCGTTGATGGATGTTGAGAGGAGGCACGgtaggtttct ... ctgcaatcagGAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG
EST: gi|88197484|gb|CI197186.1|CI197186
EST:     CGTTGGTGGAACTGCATTGACATCGTTGATGGATGTTGAGAGGAGGCACG                         GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG
genomic: CGTTGGTGGAACTGCATTGACATCGTTGATGGATGTTGAGAGGAGGCACGgtaggtttct ... ctgcaatcagGAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG
EST: gi|88249646|gb|CI249495.1|CI249495
EST:     CGTTGGTGGAACTGCATTGACATCGTTGATGGATGTTGAGAGGAGGCACG                         GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG
genomic: CGTTGGTGGAACTGCATTGACATCGTTGATGGATGTTGAGAGGAGGCACGgtaggtttct ... ctgcaatcagGAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG
EST: gi|38481421|gb|CF965510.1|CF965510
EST:     CGTTGGTGGAACTGCATTGACATCGTTGATGGATGTTGAGAGGAGGCACG                         GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG
genomic: CGTTGGTGGAACTGCATTGACATCGTTGATGGATGTTGAGAGGAGGCACGgtaggtttct ... ctgcaatcagGAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG
EST: gi|163927439|gb|EG713879.1|EG713879
EST:     CGTTGGTGGAACTGCATTGACATCGTTGATGGATGTTGAGAGGAGGCACG                         GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG
genomic: CGTTGGTGGAACTGCATTGACATCGTTGATGGATGTTGAGAGGAGGCACGgtaggtttct ... ctgcaatcagGAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG
EST: gi|29686237|gb|CB682512.1|CB682512
EST:     CGTTGGTGGAACTGCATTGACATCGTTGATGGATGTTGAGAGGAGGCACG                         GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG
genomic: CGTTGGTGGAACTGCATTGACATCGTTGATGGATGTTGAGAGGAGGCACGgtaggtttct ... ctgcaatcagGAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG
EST: gi|89179985|gb|CI044264.1|CI044264
EST:     CGTTGGTGGAACTGCATTGACATCGTTGATGGATGTTGAGAGGAGGCACG                         GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG
genomic: CGTTGGTGGAACTGCATTGACATCGTTGATGGATGTTGAGAGGAGGCACGgtaggtttct ... ctgcaatcagGAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG
EST: gi|88444188|gb|CI554905.1|CI554905
EST:     TGCATTGACATCGTTGATGGATGTTGAGAGGAGGCACG                         GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG
genomic: TGCATTGACATCGTTGATGGATGTTGAGAGGAGGCACGgtaggtttct ... ctgcaatcagGAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG
EST: gi|86846305|gb|CI339881.1|CI339881
EST:     CGTTGGTGGAACTGCATTGACATCGTTGATGGATGTTGAGAGGAGGCACG                         GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGG-ACTTGACG
genomic: CGTTGGTGGAACTGCATTGACATCGTTGATGGATGTTGAGAGGAGGCACGgtaggtttct ... ctgcaatcagGAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG
EST: gi|86854109|gb|CI252100.1|CI252100
EST:     CGTTGGTGGAACTGCATTGACATCGTTGATGGATGTTGAGAGGAGGCACG                         GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG
genomic: CGTTGGTGGAACTGCATTGACATCGTTGATGGATGTTGAGAGGAGGCACGgtaggtttct ... ctgcaatcagGAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG
EST: gi|88219371|gb|CI218931.1|CI218931
EST:     CGTTGGTGGAACTGCATTGACATCGTTGATGGATGTTGAGAGGAGGCACG                         GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG
genomic: CGTTGGTGGAACTGCATTGACATCGTTGATGGATGTTGAGAGGAGGCACGgtaggtttct ... ctgcaatcagGAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG
EST: gi|89189404|gb|CI048943.1|CI048943
EST:     CGTTGGTGGAACTGCATTGACATCGTTGATGGATGTTGAGAGGAGGCACG                         GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG
genomic: CGTTGGTGGAACTGCATTGACATCGTTGATGGATGTTGAGAGGAGGCACGgtaggtttct ... ctgcaatcagGAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG
EST: gi|88250241|gb|CI348471.1|CI348471
EST:     CGTTGGTGGAACTGCATTGACATCGTTGATGGATGTTGAGAGGAGGCACG                         GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG
genomic: CGTTGGTGGAACTGCATTGACATCGTTGATGGATGTTGAGAGGAGGCACGgtaggtttct ... ctgcaatcagGAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG
EST: gi|88247174|gb|CI247023.1|CI247023
EST:     CGTTGGTGGAACTGCATTGACATCGTTGATGGATGTTGAGAGGAGGCACG                         GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG
genomic: CGTTGGTGGAACTGCATTGACATCGTTGATGGATGTTGAGAGGAGGCACGgtaggtttct ... ctgcaatcagGAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG
EST: gi|89184848|gb|CI048404.1|CI048404
EST:     CGTTGGTGGAACTGCATTGACATCGTTGATGGATGTTGAGAGGAGGCACG                         GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG
genomic: CGTTGGTGGAACTGCATTGACATCGTTGATGGATGTTGAGAGGAGGCACGgtaggtttct ... ctgcaatcagGAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG
EST: gi|88852411|gb|CI374179.1|CI374179
EST:     CGTTGGTGGAACTGCATTGACATCGTTGATGGATGTTGAGAGGAGGCACG                         GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGT-GAACTTGACG
genomic: CGTTGGTGGAACTGCATTGACATCGTTGATGGATGTTGAGAGGAGGCACGgtaggtttct ... ctgcaatcagGAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG
EST: gi|88243281|gb|CI244403.1|CI244403
EST:     CGTTGGTGGAACTGCATTGACATCGTTGATGGATGTTGAGAGGAGGCACG                         GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG
genomic: CGTTGGTGGAACTGCATTGACATCGTTGATGGATGTTGAGAGGAGGCACGgtaggtttct ... ctgcaatcagGAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTGGCAACCTCGCTGCTCCTGTGGAAGAATGGACCGTTGGTGGAACTGCATTGACATCGTTGATGGATGTTGAGAGGAGGCACGgtaggtttctacagttccgttgtttgcacttggagattagctagctatgtttcattaaatttcttttgaccgtttattcaaatacctactatgtgattaa

- - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - -  GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG