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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAAAGGAAATAGTTGCACAGAATAAAGGGAATACTGTGCTTGAACTACAACAGAGGTCAATTGAATTCAACTCCATTATACAGAGGCATCAGTCTATAAAgtgggtgacagattctgccattgctgtgggtgctttctctaatatatttgtttctgtaagatagattaaccttgaggatgctgttgtatgaacag

Basic information

species Oryza sativa
transcript LOC_Os06g07090.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g07090.1 (Oryza sativa), 5'ss of exon 13
lower sequence: GRMZM2G017421_T01 (Zea mays), 5'ss of exon 13
TAAAGGAAATAGTTGCACAGAATAAAGGGAATACTGTGCTTGAACTACAACAGAGGTCAATTGAATTCAACTCCATTATACAGAGGCATCAGTCTATAAAgtgggtgacagattctgccattgctgtgggtgctttctctaatatatttgtttctgtaagatagattaaccttgaggatgctgttgtatgaacag
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TAAAAGAAATAGTTGCGCAAAATAAAGGGAATACTGTGCTTGAATTGCAGCAAAGATCTATTGAATTCAGTTCCATTATACAAAGACATCAGTCGATAAAgtgagtggcagattctgcaattattgaggat-cattttgtattccata-gtttgtcaaagtgaggataa---------tgctggtgtatgcgcag

upper sequence: LOC_Os06g07090.1 (Oryza sativa), 5'ss of exon 13
lower sequence: GRMZM2G030144_T03 (Zea mays), 5'ss of exon 12
TAAAGGAAATAGTTGCACAGAATAAAGGGAATACTGTGCTTGAACTACAACAGAGGTCAATTGAATTCAACTCCATTATACAGAGGCATCAGTCTATAAAgtgggtgacagattctgccattgctgtgggtgctttctctaatatatttgtttctgtaagatag-attaaccttgaggatgctgttgtatgaacag
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TAAAAGAAATAGTTGCGCAAAATAAAGGGAATACTGTGCTTGAATTGCAGCAAAGATCTATTGAATTCAGTTCCATTATACAAAGACATCAATCGATGAAgtgagtggaagatcttgcaattattgaggataattt-tgtattccgtagttttgtcaaagaaaatagtaatatggataatgctggtgtatgcgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58679925|gb|CK068612.1|CK068612
EST:     CAGTCTATAAA                         ATCATCTTTGCTTGAGCGGATGCCTGTGATAGATGAAGCTAGTTACTTGGC
genomic: CAGTCTATAAAgtgggtgaca ... gtatgaacagATCATCTTTGCTTGAGCGGATGCCTGTGATAGATGAAGCTAGTTACTTGGC
EST: gi|27546490|gb|CA764691.2|CA764691
EST:     CAGAGGTCAATTGAATTCAACTCCATTATACAGAGGCATCAGTCTATAAA                         ATCATCTTTGCTTGAGCAGATGCCTGTGATAGATGAAGCTAGTTACTTGGC
genomic: CAGAGGTCAATTGAATTCAACTCCATTATACAGAGGCATCAGTCTATAAAgtgggtgaca ... gtatgaacagATCATCTTTGCTTGAGCGGATGCCTGTGATAGATGAAGCTAGTTACTTGGC