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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACAATGTTTTCCAGTATGGCTTTGTGGCTCTTGCGATACTCACACTCTTTTACTATGCAATATTTgtaagtgcattcttccaaagtattcagtcaattcgtatgaaaatctggaaaaatgttggcttgcttatttgtcctgaactgtttgttcag

Basic information

species Oryza sativa
transcript LOC_Os06g03760.2
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g03760.2 (Oryza sativa), 5'ss of exon 13
lower sequence: GRMZM2G012284_T01 (Zea mays), 5'ss of exon 11
GTACAATGTTTTCCAGTATGGCTTTGTGGCTCTTGCGATACTCACACTCTTTTACTATGCAATATTTgtaagtgcattcttccaaagtattcagtcaattcgtatgaaaatctggaaaaatgttggcttgcttatttgtcctga--actgtttgttcag
||||||||||||||||||||||||||| |||||||| || ||||| ||||| |||||||| |||||||||||| |||| |    ||||  | ||||| |||  || || | ||  ||||    |      |   | |||  |    |||  |||||   
GTACAATGTTTTCCAGTATGGCTTTGTTGCTCTTGCCATCCTCACTCTCTTCTACTATGCTATATTTgtaagt-cattttcatcaagtgcttagtca-ttcacattaacaactataaaagaaatcatgcacaactgtgttattcccactacttgttag-

upper sequence: LOC_Os06g03760.2 (Oryza sativa), 5'ss of exon 13
lower sequence: GRMZM5G871262_T01 (Zea mays), 5'ss of exon 2
GTACAATGTTTTCCAGTATGGCTTTGTGGCTCTTGCGATACTCACACTCTTTTACTATGCAATATTTgtaagtgcattcttcc----aaagtattcagtcaatt-cgtatgaaaatctggaaaaatgttggcttgcttatttgtcctgaactgt--ttgttcag
||||||||||||||||||||||||||| |||||||| || ||||||||||| |||||||| |||||||||||| | ||| |       ||||  | ||||| || | |    || | | ||| ||     |  ||    | |||  |   |  |  |||||   
GTACAATGTTTTCCAGTATGGCTTTGTTGCTCTTGCCATCCTCACACTCTTCTACTATGCTATATTTgtaagtcctttccttttcatgaagtgcttagtcatttacattaataactatagaagaaatcaagtctgacggtatgttattcccaataattgttag-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88974640|gb|CI022966.1|CI022966
EST:     ATGGCTTTGTGGCTCTTGCGATACTCACACTCTTTTACTATGCAATATTT                         GGATGGCGAAAGAGGAAACCGACAGGAAGATTCCAGCTCTCAAATTGATTT
genomic: ATGGCTTTGTGGCTCTTGCGATACTCACACTCTTTTACTATGCAATATTTgtaagtgcat ... gtttgttcagGGATGGCGAAAGAGGAAACCGACAGGAAGATTCCAGCTCTCAAATTGATTT
EST: gi|88488642|gb|CI425913.1|CI425913
EST:     ATGGCTTTGTGGCTCTTGCGATACTCACACTCTTTTACTATGCAATATTT                         GGATGGCGAAAGAGGAAACCGACAGGAAGATTCCAGCTCTCAAATTGATTT
genomic: ATGGCTTTGTGGCTCTTGCGATACTCACACTCTTTTACTATGCAATATTTgtaagtgcat ... gtttgttcagGGATGGCGAAAGAGGAAACCGACAGGAAGATTCCAGCTCTCAAATTGATTT
EST: gi|88508361|gb|CI435867.1|CI435867
EST:     ACTCACACTCTTTTACTATGCAATATTT                         GGATGGCGAAAGAGGAAACCGACAGGAAGATTCCAGCTCTCAAATTGATTT
genomic: ACTCACACTCTTTTACTATGCAATATTTgtaagtgcat ... gtttgttcagGGATGGCGAAAGAGGAAACCGACAGGAAGATTCCAGCTCTCAAATTGATTT
EST: gi|88514370|gb|CI441876.1|CI441876
EST:     ATGGCTTTGTGGCTCTTGCGATACTCACACTCTTTTACTATGCAATATTT                         GGATGGCGAAAGAGGAAACCGACAGGAAGATTCCAGCTCTCAAATTGATTT
genomic: ATGGCTTTGTGGCTCTTGCGATACTCACACTCTTTTACTATGCAATATTTgtaagtgcat ... gtttgttcagGGATGGCGAAAGAGGAAACCGACAGGAAGATTCCAGCTCTCAAATTGATTT
EST: gi|89176031|gb|CI043052.1|CI043052
EST:     ATGGCTTTGTGGCTCTTGCGATACTCACACTCTTTTACTATGCAATATTT                         GGATGGCGAAAGAGGAAACCGACAGGAAGATTCCAGCTCTCAAATTGATTT
genomic: ATGGCTTTGTGGCTCTTGCGATACTCACACTCTTTTACTATGCAATATTTgtaagtgcat ... gtttgttcagGGATGGCGAAAGAGGAAACCGACAGGAAGATTCCAGCTCTCAAATTGATTT
EST: gi|88737037|gb|CI760545.1|CI760545
EST:     ATGGCTTTGTGGCTCTTGCGATACTCACACTCTTTTACTATGCAATATTT                         GGATGGCGAAAGAGGAAACCGACAGGAAGATTCCAGCTCTCAAATTGATTT
genomic: ATGGCTTTGTGGCTCTTGCGATACTCACACTCTTTTACTATGCAATATTTgtaagtgcat ... gtttgttcagGGATGGCGAAAGAGGAAACCGACAGGAAGATTCCAGCTCTCAAATTGATTT
EST: gi|87019966|gb|CI299364.1|CI299364
EST:     ATGGCTTTGTGGCTCTTGCGATACTCACACTCTTTTACTATGCAATATTT                         GGATGGCGAAAGAGGAAACCGACAGGAAGATTTTAGCTCTCAAATTGATTT
genomic: ATGGCTTTGTGGCTCTTGCGATACTCACACTCTTTTACTATGCAATATTTgtaagtgcat ... gtttgttcagGGATGGCGAAAGAGGAAACCGACAGGAAGATTCCAGCTCTCAAATTGATTT
EST: gi|88476562|gb|CI413833.1|CI413833
EST:     TGGCTCTTGCGATACTCACACTCTTTTACTATGCAATATTT                         GGATGGCGAAAGAGGAAACCGACAGGAAGATTCCAGCTCTCAAATTGATTT
genomic: TGGCTCTTGCGATACTCACACTCTTTTACTATGCAATATTTgtaagtgcat ... gtttgttcagGGATGGCGAAAGAGGAAACCGACAGGAAGATTCCAGCTCTCAAATTGATTT
EST: gi|88471869|gb|CI409140.1|CI409140
EST:     ATGGCTTTGTGGCTCTTGCGATACTCACACTCTTTTACTATGCAATATTT                         GGATGGCGAAAGAGGAAACCGACAGGAAGATTCCAGCTCTCAAATTGATTT
genomic: ATGGCTTTGTGGCTCTTGCGATACTCACACTCTTTTACTATGCAATATTTgtaagtgcat ... gtttgttcagGGATGGCGAAAGAGGAAACCGACAGGAAGATTCCAGCTCTCAAATTGATTT
EST: gi|89184314|gb|CI046879.1|CI046879
EST:     ATGGCTTTGTGGCTCTTGCGATACTCACACTCTTGTACTATGCAATATTT                         GGATGGCGAAAGAGGAAACCGACAGGAAGATTCCAGCTCTCCAATTGATTT
genomic: ATGGCTTTGTGGCTCTTGCGATACTCACACTCTTTTACTATGCAATATTTgtaagtgcat ... gtttgttcagGGATGGCGAAAGAGGAAACCGACAGGAAGATTCCAGCTCTCAAATTGATTT
EST: gi|88447150|gb|CI531393.1|CI531393
EST:     TGCGATACTCACACTCTTTTACTATGCAATATTT                         GGATGGCGAAAGAGGAAACCGACAGGAAGATTCCAGCTCTCAAATTGATTT
genomic: TGCGATACTCACACTCTTTTACTATGCAATATTTgtaagtgcat ... gtttgttcagGGATGGCGAAAGAGGAAACCGACAGGAAGATTCCAGCTCTCAAATTGATTT
EST: gi|88762181|gb|CI771737.1|CI771737
EST:     ATGGCTTTGTGGCTCTTGCGATACTCACACTCTTTTACTATGCAATATTT                         GGATGGCGAAAGAGGAAACCGACAGGAAGATTCCAGCTCTCAAATTGATTT
genomic: ATGGCTTTGTGGCTCTTGCGATACTCACACTCTTTTACTATGCAATATTTgtaagtgcat ... gtttgttcagGGATGGCGAAAGAGGAAACCGACAGGAAGATTCCAGCTCTCAAATTGATTT
EST: gi|88486627|gb|CI423898.1|CI423898
EST:     CTTTGTGGCTCTTGCGATACTCACACTCTTTTACTATGCAATATTT                         GGATGGCGAAAGAGGAAACCGACAGGAAGATTCCAGCTCTCAAATTGATTT
genomic: CTTTGTGGCTCTTGCGATACTCACACTCTTTTACTATGCAATATTTgtaagtgcat ... gtttgttcagGGATGGCGAAAGAGGAAACCGACAGGAAGATTCCAGCTCTCAAATTGATTT
EST: gi|89175363|gb|CI042384.1|CI042384
EST:     ATGGCTTTGTGGCTCTTGCGATACTCACACTCTTTTACTATGCAATATTT                         GGATGGCGAAAGAGGAAACCGACAGGAAGATTCCAGCTCTCAAATTGATTT
genomic: ATGGCTTTGTGGCTCTTGCGATACTCACACTCTTTTACTATGCAATATTTgtaagtgcat ... gtttgttcagGGATGGCGAAAGAGGAAACCGACAGGAAGATTCCAGCTCTCAAATTGATTT
EST: gi|89176072|gb|CI043093.1|CI043093
EST:     ATGGCTTTGTGGCTCTTGCGATACTCACACTCTTTTACTATGCAATATTT                         GGATGGCGAAAGAGGAAACCGACAGGAAGATTCCAGCTCTCAAATTGATTT
genomic: ATGGCTTTGTGGCTCTTGCGATACTCACACTCTTTTACTATGCAATATTTgtaagtgcat ... gtttgttcagGGATGGCGAAAGAGGAAACCGACAGGAAGATTCCAGCTCTCAAATTGATTT
EST: gi|88519661|gb|CI447315.1|CI447315
EST:     ATGGCTTTGTGGCTCTTGCGATACTCACACTCTTTTACTATGCAATATTT                         GGATGGCGAAAGAGGAAACCGACAGGAAGATTCCAGCTCTCAAATTGATTT
genomic: ATGGCTTTGTGGCTCTTGCGATACTCACACTCTTTTACTATGCAATATTTgtaagtgcat ... gtttgttcagGGATGGCGAAAGAGGAAACCGACAGGAAGATTCCAGCTCTCAAATTGATTT
EST: gi|88907637|gb|CI090431.1|CI090431
EST:     ATGGCTTTGTGGCTCTTGCGATACTCACACTCTTNTACTATGCAATATTT                         GGATGGCGAAAGAGGAAACCGACAGGAAGATTCCAGCTCTCAAATTGATTT
genomic: ATGGCTTTGTGGCTCTTGCGATACTCACACTCTTTTACTATGCAATATTTgtaagtgcat ... gtttgttcagGGATGGCGAAAGAGGAAACCGACAGGAAGATTCCAGCTCTCAAATTGATTT
EST: gi|15855078|gb|BI807890.1|BI807890
EST:     TGCGATACTCACACTCTTTTACTATGCCATATTT                         GGATGGCGAAAGAGGAAACCGACACGGAAGATTCCAGCTCTCAAATTGATT
genomic: TGCGATACTCACACTCTTTTACTATGCAATATTTgtaagtgcat ... gtttgttcagGGATGGCGAAAGAGGAAACCGACA-GGAAGATTCCAGCTCTCAAATTGATT
EST: gi|88245030|gb|CI244879.1|CI244879
EST:     GGCTCTTGCGATACTCACACTCTTTTACTATGCAATATTT                         GGATGGCGAAAGAGGAAACCGACAGGAAGATTCCAGCTCTCAAATTGATTT
genomic: GGCTCTTGCGATACTCACACTCTTTTACTATGCAATATTTgtaagtgcat ... gtttgttcagGGATGGCGAAAGAGGAAACCGACAGGAAGATTCCAGCTCTCAAATTGATTT
EST: gi|88263197|gb|CI366971.1|CI366971
EST:     TTTTACTATGCAATATTT                         GGATGGCGAAAGAGGAAACCGACAGGAAGATTCCAGCTCTCAAATTGATTT
genomic: TTTTACTATGCAATATTTgtaagtgcat ... gtttgttcagGGATGGCGAAAGAGGAAACCGACAGGAAGATTCCAGCTCTCAAATTGATTT
EST: gi|88997561|gb|CI390227.1|CI390227
EST:     ATGGCTTTGTGGCTCTTGCGATACTCACACTCTTTTACTATGCAATATTT                         GGATGGCGAAAGAGGAAACCGACAGGAAGATTCCAGCTCTCAAATTGATTT
genomic: ATGGCTTTGTGGCTCTTGCGATACTCACACTCTTTTACTATGCAATATTTgtaagtgcat ... gtttgttcagGGATGGCGAAAGAGGAAACCGACAGGAAGATTCCAGCTCTCAAATTGATTT
EST: gi|88471943|gb|CI409214.1|CI409214
EST:     ATGGCTTTGTGGCTCTTGCGATACTCACACTCTTTTACTATGCAATATTT                         GGATGGCGAAAGAGGAAACCGACAGGAAGATTCCAGCTCTCAAATTGATTT
genomic: ATGGCTTTGTGGCTCTTGCGATACTCACACTCTTTTACTATGCAATATTTgtaagtgcat ... gtttgttcagGGATGGCGAAAGAGGAAACCGACAGGAAGATTCCAGCTCTCAAATTGATTT
EST: gi|89163502|gb|CI100392.1|CI100392
EST:     ATGGCTTTGTGGCTCTTGCGATACTCACACTCTTTTACTATGCAATATTT                         GGATGGCGAAAGAGGAAACCGACAGGAAGATTCCAGCTCTCAAATTGATTT
genomic: ATGGCTTTGTGGCTCTTGCGATACTCACACTCTTTTACTATGCAATATTTgtaagtgcat ... gtttgttcagGGATGGCGAAAGAGGAAACCGACAGGAAGATTCCAGCTCTCAAATTGATTT
EST: gi|88460885|gb|CI553021.1|CI553021
EST:     ATGGCTTTGTGGCTCTTGCGATACTCACACTCTTTTACTATGCAATATTT                         GGATGGCGAAAGAGGAAACCGACAGGAAGATTCCAGCTCTCAAATTGATTT
genomic: ATGGCTTTGTGGCTCTTGCGATACTCACACTCTTTTACTATGCAATATTTgtaagtgcat ... gtttgttcagGGATGGCGAAAGAGGAAACCGACAGGAAGATTCCAGCTCTCAAATTGATTT
EST: gi|86869332|gb|CI339056.1|CI339056
EST:     ATGGCTTTGTGGCTCTTGCGATACTCACACTCTTTTACTATGCAATATTT                         GGATGGCGAAAGAGGAAACCGACAGGAAGATTCCAGCTCTCAAATTGATTT
genomic: ATGGCTTTGTGGCTCTTGCGATACTCACACTCTTTTACTATGCAATATTTgtaagtgcat ... gtttgttcagGGATGGCGAAAGAGGAAACCGACAGGAAGATTCCAGCTCTCAAATTGATTT
EST: gi|86484582|gb|CI127215.1|CI127215
EST:     ATGGCTTTGTGGCTCTTGCGATACTCACACTCTTTTACTATGCAATATTT                         GGATGGCGAAAGAGGAAACCGACAGGAAGATTCCAGCTCTCAAATTGATTT
genomic: ATGGCTTTGTGGCTCTTGCGATACTCACACTCTTTTACTATGCAATATTTgtaagtgcat ... gtttgttcagGGATGGCGAAAGAGGAAACCGACAGGAAGATTCCAGCTCTCAAATTGATTT
EST: gi|5667175|gb|AU077435.1|AU077435
EST:     ATGGCTTTGTGGCTCTTGCGATACTCACACTCTTTTACTATGCAATATTT                         GGATGGCGAAAGAGGAAACCGACAGGAAGATTCCAGCTCTCAAATTGATTT
genomic: ATGGCTTTGTGGCTCTTGCGATACTCACACTCTTTTACTATGCAATATTTgtaagtgcat ... gtttgttcagGGATGGCGAAAGAGGAAACCGACAGGAAGATTCCAGCTCTCAAATTGATTT
EST: gi|88961963|gb|CI097116.1|CI097116
EST:     ATGGCTTTGTGGCTCTTGCGATACTCACACTCTTNTACTATGCAATATTT                         GGATGGCGAAAGAGGAAACCGACAGGAAGATTCCAGCTCTCAAATTGATTT
genomic: ATGGCTTTGTGGCTCTTGCGATACTCACACTCTTTTACTATGCAATATTTgtaagtgcat ... gtttgttcagGGATGGCGAAAGAGGAAACCGACAGGAAGATTCCAGCTCTCAAATTGATTT
EST: gi|88292088|gb|CI534882.1|CI534882
EST:     ACTCACACTCTTTTACTATGCAATATTT                         GGATGGCGAAAGAGGAAACCGACAGGAAGATTCCAGCTCTCAAATTGATTT
genomic: ACTCACACTCTTTTACTATGCAATATTTgtaagtgcat ... gtttgttcagGGATGGCGAAAGAGGAAACCGACAGGAAGATTCCAGCTCTCAAATTGATTT
EST: gi|88284096|gb|CI405542.1|CI405542
EST:     ATGGCTTTGTGGCTCTTGCGATACTCACACTCTTTTACTATGCAATATTT                         GGATGGCGAAAGAGGAAACCGACAGGAAGATTCCAGCTCTCAAATTGATTT
genomic: ATGGCTTTGTGGCTCTTGCGATACTCACACTCTTTTACTATGCAATATTTgtaagtgcat ... gtttgttcagGGATGGCGAAAGAGGAAACCGACAGGAAGATTCCAGCTCTCAAATTGATTT
EST: gi|89163461|gb|CI100351.1|CI100351
EST:     ATGGCTTTGTGGCTCTTGCGATACTCACACTCTTGTACTATGCAATATTT                         GGATGGCGAAAGAGGAAACCGACAGGAAGATTCCAGCTCTCAAATTGATTT
genomic: ATGGCTTTGTGGCTCTTGCGATACTCACACTCTTTTACTATGCAATATTTgtaagtgcat ... gtttgttcagGGATGGCGAAAGAGGAAACCGACAGGAAGATTCCAGCTCTCAAATTGATTT
EST: gi|29679858|gb|CB676133.1|CB676133
EST:     ATGGCTTTGTGGCTCTTGCGATACTCACACTCTTTTACTATGCAATATTT                         GGATGGCGAAAGAGGAAACCGACAGGAAGATTCCAGCTCTCAAATTGATTT
genomic: ATGGCTTTGTGGCTCTTGCGATACTCACACTCTTTTACTATGCAATATTTgtaagtgcat ... gtttgttcagGGATGGCGAAAGAGGAAACCGACAGGAAGATTCCAGCTCTCAAATTGATTT