Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAACATGGAAGATGAGTTAGAAGAAACTGAGATAGAAGGCTTTGATGCGCAGACTCAGACTTTGTTTTGTCAAAATGCCATCAATGATCTGCTTATACAGgtgccttttttaatcactgcttcgttcatttttgttgcatttcttgtaagtaatacatccatgaatttgtggggtatggaatttgaaggaaccctatttg...

Basic information

species Oryza sativa
transcript LOC_Os05g51480.2
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g51480.2 (Oryza sativa), 5'ss of exon 13
lower sequence: GRMZM2G430027_T01 (Zea mays), 5'ss of exon 1
GAACATGGAAGATGAGTTAGAAGAAACTGAGATAGAAGGCTTTGATGCGCAGACTCAGACTTTGTTTTGTCAAAATGCCATCAATGATCTGCTTATACAGgtgccttttttaatcactgcttcgttca-tttttgttgcatttcttgtaagtaatacatccatgaatttgtggggtatggaatttgaaggaaccctatttg---
|||||||||||||||  | ||||| || |||||||| || |||||||| || ||||||||  |||||||||||||||| |||||||| || ||||||||||||||| || |||| ||   || ||  | ||||| ||||||||     |  ||  |         | |  |    |||    | || |  ||     |  |   
GAACATGGAAGATGAACTTGAAGAGACCGAGATAGAGGGGTTTGATGCACAAACTCAGACCCTGTTTTGTCAAAATGCGATCAATGACCTTCTTATACAGgtgcctgttctaatgaccattttgtcaaatttttcttgcatttaacacac-taccatgctagcagactattattctatc---tgtgcattaatttagtaaggta

upper sequence: LOC_Os05g51480.2 (Oryza sativa), 5'ss of exon 13
lower sequence: GRMZM2G402002_T01 (Zea mays), 5'ss of exon 13
GAACATGGAAGATGAGTTAGAAGAAACTGAGATAGAAGGCTTTGATGCGCAGACTCAGACTTTGTTTTGTCAAAATGCCATCAATGATCTGCTTATACAGgtgccttttttaatcactgcttcgttcatttttgttgcatttcttgtaagtaatacatccatgaatttgtggggtatggaatttgaag--gaaccctatttg
|||||||||||||||  ||||||| ||||||||||| || |||||||| || ||||| ||| |||||||||| ||||| ||||||||||| ||||||||||||| | || |||       || | |   |   |    |||| | ||   |  |   |  ||    || | |    |  | | | ||   || ||  | |||
GAACATGGAAGATGAACTAGAAGAGACTGAGATAGAGGGGTTTGATGCACAAACTCAAACTCTGTTTTGTCAGAATGCGATCAATGATCTTCTTATACAGgtgcttgttctaagggggtgtttggtttctagcgactaatttttagtccct--tcattttattctattttagttcctaaactgtaaaatagatcctaaattg

upper sequence: LOC_Os05g51480.2 (Oryza sativa), 5'ss of exon 13
lower sequence: Vv10s0003g04360.t01 (Vitis vinifera), 5'ss of exon 13
GAACATGGAAGATGAGTTAGAAGAAACTGAGATAGAAGGCTTTGATGCGCAGACTCAGACTTTGTTTTGTCAAAATGCCATCAATGATCTGCTTATACAGgt-gccttttttaatcactgcttcgttcatttttgttgcatttcttgtaagtaat-acatccatgaatttgtggggtatggaatttgaaggaaccctatttg
|||  | ||||||||||| ||||||||||||||||| || ||   | | ||    ||||||||||| || ||  ||||  |  ||||||  ||  |||| || | |||| |||||    |  |  |  ||| || ||   | | |  |  | | | | ||  || |||||            |    || |  | | |    
GAATCTTGAAGATGAGTTGGAAGAAACTGAGATAGAGGGTTTCTGTTCTCAAGTGCAGACTTTGTTCTGCCATGATGCTGTTTATGATCAACTAGTACAAgtaggctttcttaatttgggtgttttatattatttttttctgtataatttggattgatattaataaatttccttaacgaatcaacccaaagtgcaccaaa--

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58668330|gb|CK057016.1|CK057016
EST:     AGACTCAGACTTNG-TTTGTCAAAATGCCATCAATGATCTGCTTATACAG                         GTTACTGCTAATTCTGTTCGTCTGGTTAGTTGTACCTCTCGGGAGCTAGTG
genomic: AGACTCAGACTTTGTTTTGTCAAAATGCCATCAATGATCTGCTTATACAGgtgccttttt ... tcaatgacagGTTACTGCTAATTCTGTTCGTCTGGTTAGTTGTACCTCTCGGGAGCTAGTG
EST: gi|29630334|gb|CB635343.1|CB635343
EST:     AGACTCAGACTTTGTTTTGTCAAAATGCCCCCAATGATCTGCTTATACAG                         GTTACTGCTAATTCTGTTCGTCTGGTTAGTTGTACCTCTCGGGAGCTAGTG
genomic: AGACTCAGACTTTGTTTTGTCAAAATGCCATCAATGATCTGCTTATACAGgtgccttttt ... tcaatgacagGTTACTGCTAATTCTGTTCGTCTGGTTAGTTGTACCTCTCGGGAGCTAGTG
EST: gi|29669278|gb|CB665553.1|CB665553
EST:     AGACTCAGACTTTGTTTTGTCAAAATGCCATCAATGATCTGCTTATACAG                         GTTACTGCTAATTCTGTTCGTCTGGTTAGTTGTACCTCTCGGGAGCTAGTG
genomic: AGACTCAGACTTTGTTTTGTCAAAATGCCATCAATGATCTGCTTATACAGgtgccttttt ... tcaatgacagGTTACTGCTAATTCTGTTCGTCTGGTTAGTTGTACCTCTCGGGAGCTAGTG
EST: gi|29634960|gb|CB639969.1|CB639969
EST:     AGACTCAGACTTTGTTTTGTCAAAATGCCATCAATGATCTGCTTATACAA                         GTTACTGCTAATTCTGTTCGTCTGGTTAGTTGTACCTCTCGGGAGCTAGTG
genomic: AGACTCAGACTTTGTTTTGTCAAAATGCCATCAATGATCTGCTTATACAGgtgccttttt ... tcaatgacagGTTACTGCTAATTCTGTTCGTCTGGTTAGTTGTACCTCTCGGGAGCTAGTG
EST: gi|29632887|gb|CB637896.1|CB637896
EST:     AGACTCAGACTTTGTTTTGTCAAAATGCCATCAATGATCTGCTTATACAG                         GTTACTGCTAATTCTGTTCGTCTGGTTAGTTGTACCTCTCGGGAGCTAGTG
genomic: AGACTCAGACTTTGTTTTGTCAAAATGCCATCAATGATCTGCTTATACAGgtgccttttt ... tcaatgacagGTTACTGCTAATTCTGTTCGTCTGGTTAGTTGTACCTCTCGGGAGCTAGTG
EST: gi|87009621|gb|CI309142.1|CI309142
EST:     AGACTCAGACTTTGTTTTGTCAAATTGCCATCAATGATCTGCTTATACAG                         GTTGCTGCTAATTCTGTTCGTCTGGTTAGTTGTACCTCTCGGGAGCTAGTG
genomic: AGACTCAGACTTTGTTTTGTCAAAATGCCATCAATGATCTGCTTATACAGgtgccttttt ... tcaatgacagGTTACTGCTAATTCTGTTCGTCTGGTTAGTTGTACCTCTCGGGAGCTAGTG