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TATGTTAGCAAGGAAATTGGCCATAAAATTAGCATTTACTCTACCAGCATCCTCCTATGCTACAATGGCTATTAGGGAGTTGCTGAAGACTTCAACCTCGgtatgtttctcaactaatattatattactattcttttactagaatttaaatgatgttaaatggactctgtttatggtgttatgcatagttaagaatgcat...
species | Oryza sativa |
transcript | LOC_Os05g43374.1 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: CCTCCTATGCTACAATGGCTATTAGGGAGTTGCTGAAGACTTCAACCTCG GTCACGTATCAGAAAACACTCGATTGTTAATTTTGTTATTGACATCAATTCEST: gi|86869632|gb|CI322118.1|CI322118
genomic: CCTCCTATGCTACAATGGCTATTAGGGAGTTGCTGAAGACTTCAACCTCGgtatgtttct ... tcgtctgcagGTCACGTATCAGAAAACACTCGATTGTTAATTTTGTTATTGACATCAATTC
EST: CCTCCTATGCTACAATGGCTATTAGGGAGTTGCTGAAGACTTCAACCTCG GTCACGTATCAGAAAACACTCGATTGTTAATTTTGTTATTGACATCAATTCEST: gi|88502883|gb|CI430389.1|CI430389
genomic: CCTCCTATGCTACAATGGCTATTAGGGAGTTGCTGAAGACTTCAACCTCGgtatgtttct ... tcgtctgcagGTCACGTATCAGAAAACACTCGATTGTTAATTTTGTTATTGACATCAATTC
EST: CCTCCTATGCTACAATGGCTATTAGGGAGTTGCTGAAGACTTCAACCTCA GTCACGTATCAGAAAACACTCGATTGTTAATTTTGTTATTGACATCAATTCEST: gi|88510224|gb|CI437730.1|CI437730
genomic: CCTCCTATGCTACAATGGCTATTAGGGAGTTGCTGAAGACTTCAACCTCGgtatgtttct ... tcgtctgcagGTCACGTATCAGAAAACACTCGATTGTTAATTTTGTTATTGACATCAATTC
EST: CCTCCTATGCTACAATGGCTATTAGGGAGTTGCTGAAGACTTCAACCTCA GTCACGTATCAGAAAACACTCGATTGTTAATTTTGTTATTGACATCAATTCEST: gi|86827246|gb|CI270918.1|CI270918
genomic: CCTCCTATGCTACAATGGCTATTAGGGAGTTGCTGAAGACTTCAACCTCGgtatgtttct ... tcgtctgcagGTCACGTATCAGAAAACACTCGATTGTTAATTTTGTTATTGACATCAATTC
EST: CCTCCTATGCTACAATGGCTATTAGGGAGTTGCTGAAGACTTCAACCTCG GTCACGTATCAGAAAACACTCGATTGTTAATTTTGTTATTGACATCAATTCEST: gi|88484492|gb|CI421763.1|CI421763
genomic: CCTCCTATGCTACAATGGCTATTAGGGAGTTGCTGAAGACTTCAACCTCGgtatgtttct ... tcgtctgcagGTCACGTATCAGAAAACACTCGATTGTTAATTTTGTTATTGACATCAATTC
EST: CCTCCTATGCTACAATGGCTATTAGGGAGTTGCTGAAGACTTCAACCTCA GTCACGTATCAGAAAACACTCGATTGTTAATTTTGTTATTGACATCAATTC
genomic: CCTCCTATGCTACAATGGCTATTAGGGAGTTGCTGAAGACTTCAACCTCGgtatgtttct ... tcgtctgcagGTCACGTATCAGAAAACACTCGATTGTTAATTTTGTTATTGACATCAATTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TATGTTAGCAAGGAAATTGGCCATAAAATTAGCATTTACTCTACCAGCATCCTCCTATGCTACAATGGCTATTAGGGAGTTGCTGAAGACTTCAACCTCGgtatgtttctcaactaatattatattactattcttttactagaatttaaatgatgttaaatggactctgtttatggtgttatgcatagttaagaatgcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA