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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATACAGTTCAAAGTTTGGTGACATTTCATCTAATGGATGGACCAATACAAGCGATGAATGTGTAGATCCAGTCCAGGTGCCATTGCAATTGAAACAACTGgtatgagcctatatttcttatcacaaaacgtccatttatttttcttcttctaataggttttgcttggttctggttttgcag

Basic information

species Oryza sativa
transcript LOC_Os05g36960.1
intron # 13
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58605201|gb|CK033234.1|CK033234
EST:     GCGATGAATGTGTAGATCCAGTCCAGGCGCCATTGCAATTGAAACAACTG                         TCACCAACTGTTGAGCATTGTCCAAAGTTAAAAAATTCTGGGTCCTCGACT
genomic: GCGATGAATGTGTAGATCCAGTCCAGGTGCCATTGCAATTGAAACAACTGgtatgagcct ... ggttttgcagTCACCAACTGTTGAGCATTGTCCAAAGTTAAAAAATTCCGGGTCCTCAACT
EST: gi|58676479|gb|CK065166.1|CK065166
EST:     GCGATGAATGTGTAGATCCAGTCCAGGCGCCATTGCAATTGAAACAACTG                         TCACCAACTGTTGAGCATTGTCCAAAGTTAAAAAATTCTGGGTCCTCAACT
genomic: GCGATGAATGTGTAGATCCAGTCCAGGTGCCATTGCAATTGAAACAACTGgtatgagcct ... ggttttgcagTCACCAACTGTTGAGCATTGTCCAAAGTTAAAAAATTCCGGGTCCTCAACT