1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
CTATGTGAGTCAGCGAACTTCTTTAACTAAATCAACCATATCGAAGTGAAGTACCTGGCATGCACCGCGCGAGACAGGATGGATGGGTACTTCAACTTTGgttagtgctctcttgatgtgaaactatgaacattgttaccgaaccgttaagcatatttttcttactcgttttatttatacctgttctgcag
species | Oryza sativa |
transcript | LOC_Os05g34650.1 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: GTACCTGGCATGCACCGCGCGAGACAGGATGGATGGGTACTTCAACTTTG GAGCGATGTGCAACATCATGGGGTATGCTGACTCATGGAAAGACGGGGAAGEST: gi|117223389|gb|CT846265.1|CT846265
genomic: GTACCTGGCATGCACCGCGCGAGACAGGATGGATGGGTACTTCAACTTTGgttagtgctc ... tgttctgcagGAGCGATGTGCAACATCATGGGGTATGCTGACTCATGGAAAGACGGGGAAG
EST: GTACCTGGCATGCACCGCGCGAGACAGGATGGATGGGTACTTCAACTTTG GAGCGATGTGCAACAEST: gi|88502051|gb|CI429557.1|CI429557
genomic: GTACCTGGCATGCACCGCGCGAGACAGGATGGATGGGTACTTCAACTTTGgttagtgctc ... tgttctgcagGAGCGATGTGCAACA
EST: GTACCTGGCATGCACCGCGCGAGACAGGATGGATGGGTACTTCAACTTTG GAGCGATGTGCAACATCATGGGGTATGCTGACTCATGGAAAGACGGGGAAGEST: gi|218496920|gb|FG952344.1|FG952344
genomic: GTACCTGGCATGCACCGCGCGAGACAGGATGGATGGGTACTTCAACTTTGgttagtgctc ... tgttctgcagGAGCGATGTGCAACATCATGGGGTATGCTGACTCATGGAAAGACGGGGAAG
EST: GTACCTGGCATGCACCGCGCGAGACAGGATGGATGGGTACTTCAACTTTG GAGCGATGTCCAACATCATGGGGTATGCTGACTCATGGAAAGACGGGGAAGEST: gi|88472792|gb|CI410063.1|CI410063
genomic: GTACCTGGCATGCACCGCGCGAGACAGGATGGATGGGTACTTCAACTTTGgttagtgctc ... tgttctgcagGAGCGATGTGCAACATCATGGGGTATGCTGACTCATGGAAAGACGGGGAAG
EST: GTACCTGGCATGCACCGCGCGAGACAGGATGGATGGGTACTTCAACTTTG GAGCGATGTGCAACATCATGGGGTATGCTGACTCATGGAAAGACGGGGAAGEST: gi|88539793|gb|CI469780.1|CI469780
genomic: GTACCTGGCATGCACCGCGCGAGACAGGATGGATGGGTACTTCAACTTTGgttagtgctc ... tgttctgcagGAGCGATGTGCAACATCATGGGGTATGCTGACTCATGGAAAGACGGGGAAG
EST: GTACCTGGCATGCACCGCGCGAGACAGGATGGATGGGTACTTCCACTTTG GAGCGATGTGCAACATCATGGGGTATGCTTACTCATTGAAAGACGGGGAAGEST: gi|88979302|gb|CI025804.1|CI025804
genomic: GTACCTGGCATGCACCGCGCGAGACAGGATGGATGGGTACTTCAACTTTGgttagtgctc ... tgttctgcagGAGCGATGTGCAACATCATGGGGTATGCTGACTCATGGAAAGACGGGGAAG
EST: GTACCTGGCATGCACCGCGCGAGACAGGATGGATGGGTACTTCAACTTTG GAGCGATGTGCAACATCATGGGGTATGCTGACTCATGGAAAGACGGGGAAGEST: gi|12622951|gb|AU173164.1|AU173164
genomic: GTACCTGGCATGCACCGCGCGAGACAGGATGGATGGGTACTTCAACTTTGgttagtgctc ... tgttctgcagGAGCGATGTGCAACATCATGGGGTATGCTGACTCATGGAAAGACGGGGAAG
EST: GTACCTGGCATGCACCGCGCGAGACAGGATGGATGGGTACTTCAACTTTG GAGCGATGTGCAACATCATGGGGTATGCTGACTCATGGAAAGACGGGGAAGEST: gi|88536102|gb|CI465826.1|CI465826
genomic: GTACCTGGCATGCACCGCGCGAGACAGGATGGATGGGTACTTCAACTTTGgttagtgctc ... tgttctgcagGAGCGATGTGCAACATCATGGGGTATGCTGACTCATGGAAAGACGGGGAAG
EST: GTACCTGGCATGCACCGCGCGAGACAGGATGGATGGGTACTTCAACTTTG GAGCGATGTGCAACATCATGGGGTATGCTGACTCATGGAAAGACGGGGAAGEST: gi|88545613|gb|CI475182.1|CI475182
genomic: GTACCTGGCATGCACCGCGCGAGACAGGATGGATGGGTACTTCAACTTTGgttagtgctc ... tgttctgcagGAGCGATGTGCAACATCATGGGGTATGCTGACTCATGGAAAGACGGGGAAG
EST: GTACCTGGCATGCACCGCGCGAGACAGGATGGATGGGTACTTCAACTTTG GAGCGATGTGCAACATCATGGGGTATGCTGACTCATGGAAAGACGGGGAAGEST: gi|88446473|gb|CI536504.1|CI536504
genomic: GTACCTGGCATGCACCGCGCGAGACAGGATGGATGGGTACTTCAACTTTGgttagtgctc ... tgttctgcagGAGCGATGTGCAACATCATGGGGTATGCTGACTCATGGAAAGACGGGGAAG
EST: GTACCTGGCATGCACCGCGCGAGACAGGATGGATGGGTACTTCAACTTTG GAGCGATGTGCAACATCATGGGGTATGCTGACTCATGGAAAGACGGGGAAG
genomic: GTACCTGGCATGCACCGCGCGAGACAGGATGGATGGGTACTTCAACTTTGgttagtgctc ... tgttctgcagGAGCGATGTGCAACATCATGGGGTATGCTGACTCATGGAAAGACGGGGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTATGTGAGTCAGCGAACTTCTTTAACTAAATCAACCATATCGAAGTGAAGTACCTGGCATGCACCGCGCGAGACAGGATGGATGGGTACTTCAACTTTGgttagtgctctcttgatgtgaaactatgaacattgttaccgaaccgttaagcatatttttcttactcgttttatttatacctgttctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA