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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTACCTTTTCAGTTCCGGCAAGCCTTATTATGCCCTGGCACTGCTAGGACTCACAATTCCTCAGGTGGTCTTTCAGgtgagctggtcgttccaattagttctcccaaatggtttcctttatttctctggtctgatcccactcagtacaaaacatttcaaactgctgtgaatattaa...

Basic information

species Oryza sativa
transcript LOC_Os05g28200.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g28200.2 (Oryza sativa), 5'ss of exon 12
lower sequence: GRMZM2G162672_T01 (Zea mays), 5'ss of exon 13
GCTACCTTTTCAGTTCCGGCAAGCCTTATTATGCCCTGGCACTGCTAGGACTCACAATTCCTCAGGTGGTCTTTCAGgtg-agctg---gtcgttccaattagttctcccaaatggtttcctttat---ttctctggtctgatcccactcagtacaaaac-atttcaaactgctgtgaatattaa
| ||||| || ||  |||| ||||  |||||||||||||   |||| || || ||||||||||||||| ||||||||||  | |||   || ||| ||  | ||| |       |    ||  |     || | | || || |||   |   | ||         |||| |||  |         
GTTACCTATTGAGCACCGGTAAGCTGTATTATGCCCTGGTGTTGCTTGGGCTAACAATTCCTCAGGTGTTCTTTCAGgtatacctgagtgttgttgcaccttgtttttttgtgggtgggccagtggggatttttttgtttgttccagatgttttcatgtttgaagcaaagtgccttc--------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|38481364|gb|CF965453.1|CF965453
EST:     ATTATGCCCTGGCACTGCTAGGACTCACAATTCCTCAGGTGGTCTTTCAG                         TTCCAATACTTCCTCAAGGACCCTGTGAAGTATGACGTCAAATACCAG
genomic: ATTATGCCCTGGCACTGCTAGGACTCACAATTCCTCAGGTGGTCTTTCAGgtgagctggt ... cttggagcagTTCCAATACTTCCTCAAGGACCCTGTGAAGTATGACGTCAAATACCAG
EST: gi|27547699|gb|CA765724.2|CA765724
EST:     ATTATGCCCTGGCACTGCTAGGACTCACAATTCCTCAGGTGGTCTTTCAG                         TTCCAATACTTCCTCAAGGACCCTGTGAAGTATGACGTCAAATACCAG
genomic: ATTATGCCCTGGCACTGCTAGGACTCACAATTCCTCAGGTGGTCTTTCAGgtgagctggt ... cttggagcagTTCCAATACTTCCTCAAGGACCCTGTGAAGTATGACGTCAAATACCAG
EST: gi|88967759|gb|CI098001.1|CI098001
EST:     ATTATGCCCTGGCACTGCTAGGACTCACAATTCCTCAGGTGGTCTTTCAG                         TTCCAATACTTCCTCAAGGACCCTGTGAAGTATGACGTCAAATACCAG
genomic: ATTATGCCCTGGCACTGCTAGGACTCACAATTCCTCAGGTGGTCTTTCAGgtgagctggt ... cttggagcagTTCCAATACTTCCTCAAGGACCCTGTGAAGTATGACGTCAAATACCAG
EST: gi|86540861|gb|CI181067.1|CI181067
EST:     GCACTGCTAGGACTCACAATTCCTCAGGTGGTCTTTCAG                         TTCCAATACTTCCTCAAGGACCCTGTGAAGTATGACGTCAAATACCAG
genomic: GCACTGCTAGGACTCACAATTCCTCAGGTGGTCTTTCAGgtgagctggt ... cttggagcagTTCCAATACTTCCTCAAGGACCCTGTGAAGTATGACGTCAAATACCAG
EST: gi|86494917|gb|CI137550.1|CI137550
EST:     ATTATGCCCTGGCACTGCTAGGACTCACAATTCCTCAGGTGGTCTTTCAG                         TTCCAATACTTCCTCAAGGACCCTGTGAAGTATGACGTCAAATACCAG
genomic: ATTATGCCCTGGCACTGCTAGGACTCACAATTCCTCAGGTGGTCTTTCAGgtgagctggt ... cttggagcagTTCCAATACTTCCTCAAGGACCCTGTGAAGTATGACGTCAAATACCAG
EST: gi|86596619|gb|CI286532.1|CI286532
EST:     ATTATGCCCTGGCACTGCTAGGACTCACAATTCCTCAGGTGGTCTTTCAG                         TTCCAATACTTCCTCAAGGACCCTGTGAAGTATGACGTCAAATACCAG
genomic: ATTATGCCCTGGCACTGCTAGGACTCACAATTCCTCAGGTGGTCTTTCAGgtgagctggt ... cttggagcagTTCCAATACTTCCTCAAGGACCCTGTGAAGTATGACGTCAAATACCAG
EST: gi|3763399|gb|AU030151.1|AU030151
EST:     TCCTCAGGTGGTCTTTCAG                         TTCCAATACTTCCTCAAGGACCCTGTGAAGTATGACGTCAAATACCAG
genomic: TCCTCAGGTGGTCTTTCAGgtgagctggt ... cttggagcagTTCCAATACTTCCTCAAGGACCCTGTGAAGTATGACGTCAAATACCAG