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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGATTTTTCGTACAACCAACTCACTGGGAGCATTCCTTCTTGGGCTAGACAAAACAATTTACAGTTgtaagtgtaaaagtgtgatatttgtgtcgctgagaaaaaatataaatactaatattctgttttttgaaag

Basic information

species Oryza sativa
transcript LOC_Os05g17604.3
intron # 13
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29627199|gb|CB632210.1|CB632210
EST:     CAACTCACTGGGAGCATTCCTTCTTGGGCTAGACAAAACAATTTACAGTT                         GAATTTGGTGGCAAACAACTTCTTACTCGATACCACCAGTGAAAG
genomic: CAACTCACTGGGAGCATTCCTTCTTGGGCTAGACAAAACAATTTACAGTTgtaagtgtaa ... tttttgaaagGAATTTGGTGGCAAACAACTTCTTACTCGATACCACCAGTGAAAG
EST: gi|29680539|gb|CB676814.1|CB676814
EST:     CAACTCACTGGGAGCATTCCTTCTTGGGCTAGACAAAACAATTTACAGTT                         GAATTTGGTGGCAAACAACTTCTTACTCGATACCACCAGTGAAAG
genomic: CAACTCACTGGGAGCATTCCTTCTTGGGCTAGACAAAACAATTTACAGTTgtaagtgtaa ... tttttgaaagGAATTTGGTGGCAAACAACTTCTTACTCGATACCACCAGTGAAAG
EST: gi|313081081|gb|HO213667.1|HO213667
EST:     CAACTCACTGGGAGCATTCCTTCTTGGGCTAGACAAAACAATTTACAGTT                         GAATTTGGTGGCAAACAACTTCTTACTCGATACCACCAGTGAAAGT
genomic: CAACTCACTGGGAGCATTCCTTCTTGGGCTAGACAAAACAATTTACAGTTgtaagtgtaa ... tttttgaaagGAATTTGGTGGCAAACAACTTCTTACTCGATACCACCAGTGAAAGT
EST: gi|29627859|gb|CB632870.1|CB632870
EST:     CAACTCACTGGGAGCATTCCTTCTTGGGCTAGACAAAACAATTTACAGTT                         GAATTTGGTGGCAAACAACTTCTTACTCGATACCACCAGTGAAAG
genomic: CAACTCACTGGGAGCATTCCTTCTTGGGCTAGACAAAACAATTTACAGTTgtaagtgtaa ... tttttgaaagGAATTTGGTGGCAAACAACTTCTTACTCGATACCACCAGTGAAAG
EST: gi|29670272|gb|CB666547.1|CB666547
EST:     CAACTCACTGGGAGCATTCCTTCTTGGGCTAGACAAAACAATTTACAGTT                         GAATTTGGTGGCAAACAACTTCTTACTCGATACCACCAGTGAAAG
genomic: CAACTCACTGGGAGCATTCCTTCTTGGGCTAGACAAAACAATTTACAGTTgtaagtgtaa ... tttttgaaagGAATTTGGTGGCAAACAACTTCTTACTCGATACCACCAGTGAAAG
EST: gi|29628146|gb|CB633157.1|CB633157
EST:     CAACTCACTGGGAGCATTCCTTCTTGGGCTAGACAAAACAATTTACAGTT                         GAATTTGGTGGCAAACAACTTCTTACTCGATACCACCAGTGAAAG
genomic: CAACTCACTGGGAGCATTCCTTCTTGGGCTAGACAAAACAATTTACAGTTgtaagtgtaa ... tttttgaaagGAATTTGGTGGCAAACAACTTCTTACTCGATACCACCAGTGAAAG
EST: gi|29664573|gb|CB660848.1|CB660848
EST:     CAACTCACTGGGAGCATTCCTTCTTGGGCTAGACAAAACAATTTACAGTT                         GAATTTGGTGGCAAACAACTTCTTACTCGATACCACCAGTGAAAG
genomic: CAACTCACTGGGAGCATTCCTTCTTGGGCTAGACAAAACAATTTACAGTTgtaagtgtaa ... tttttgaaagGAATTTGGTGGCAAACAACTTCTTACTCGATACCACCAGTGAAAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGATTTTTCGTACAACCAACTCACTGGGAGCATTCCTTCTTGGGCTAGACAAAACAATTTACAGTTgtaagtgtaaaagtgtgatatttgtgtcgctgagaaaaaatataaatactaatattctgttttttgaaag

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