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GTTGGGCTGTTGTATGATGAGGAATCACTGCAAAGTATTTCGGACATGACCTCTGATTGGACAAATGAGGAAAGAGAAATGCTAAGGCGAAAGgtatcttgagttatttgtgctctctgtccctgccaagttatataatatactgttgatccataaataaacttttgttttgccttacaatcaccagtttaac...
species | Oryza sativa |
transcript | LOC_Os05g03820.2 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: ACATGACCTCTGATTGGACAAATGAGGAAAGAGAAATGCTAAGGCGAAAG GTACCTGTAACCGGTTTGAAGACACCCTTCCGGGATGGATATGTAAGAGATEST: gi|88723315|gb|CI746825.1|CI746825
genomic: ACATGACCTCTGATTGGACAAATGAGGAAAGAGAAATGCTAAGGCGAAAGgtatcttgag ... atttgattagGTACCTGTAACCGGTTTGAAGACACCCTTCCGGGATGGATATGTAAGAGAT
EST: ACATGACCTCTGATTGGACAAATGAAGAAAGAGAAATGCTAAGGCGAAAG GTACCTGTAACCGGTTTGAAGACACCCTTCCGGGATGGATATGTAAGAGATEST: gi|11442624|gb|BF430527.1|BF430527
genomic: ACATGACCTCTGATTGGACAAATGAGGAAAGAGAAATGCTAAGGCGAAAGgtatcttgag ... atttgattagGTACCTGTAACCGGTTTGAAGACACCCTTCCGGGATGGATATGTAAGAGAT
EST: ACATGACCTCTGATTGGACAAATGAGGAAAGAGAAATGCTAAGGCGAAAG GTACCTGTAACCGGTTTGAAGACACCCTTCCGGGATGGATATGTAAGAGATEST: gi|29645922|gb|CB650929.1|CB650929
genomic: ACATGACCTCTGATTGGACAAATGAGGAAAGAGAAATGCTAAGGCGAAAGgtatcttgag ... atttgattagGTACCTGTAACCGGTTTGAAGACACCCTTCCGGGATGGATATGTAAGAGAT
EST: ACATGACCTCTGATTGGACAAATGAGGAAAGAGAAATGCTAAGGCGAAAG GTACCTGTAACCGGTTTGAAGACACCCTTCCGGGATGGATATGTAAGAGATEST: gi|2311262|gb|C27417.1|C27417
genomic: ACATGACCTCTGATTGGACAAATGAGGAAAGAGAAATGCTAAGGCGAAAGgtatcttgag ... atttgattagGTACCTGTAACCGGTTTGAAGACACCCTTCCGGGATGGATATGTAAGAGAT
EST: ACATGACCTCTGATTGGACAAATGAGGAAAGAGAAATGCTAAGGCGAAAG GTACCTGTAACCGGTTTGAAGACACCCTTCCGGGATGGATATGTAAGAGATEST: gi|58663354|gb|CK052040.1|CK052040
genomic: ACATGACCTCTGATTGGACAAATGAGGAAAGAGAAATGCTAAGGCGAAAGgtatcttgag ... atttgattagGTACCTGTAACCGGTTTGAAGACACCCTTCCGGGATGGATATGTAAGAGAT
EST: ACATGACCTCTGATTGGACAAATGAGGAAAGAGAAATGCTAAGGCGAAAG GTACCTGTAACCGGTTTGAAGACACCCTTCCGGGATGGATATGTAAGAGATEST: gi|2311714|gb|C27869.1|C27869
genomic: ACATGACCTCTGATTGGACAAATGAGGAAAGAGAAATGCTAAGGCGAAAGgtatcttgag ... atttgattagGTACCTGTAACCGGTTTGAAGACACCCTTCCGGGATGGATATGTAAGAGAT
EST: GGACAAATGAGGAAAGAGAAATGCTAAGGCGAAAG GTACCTGTAACCGGTTTGAAGACACCCTTCCGGGATGGATATGTAAGAGATEST: gi|58695197|gb|CK083884.1|CK083884
genomic: GGACAAATGAGGAAAGAGAAATGCTAAGGCGAAAGgtatcttgag ... atttgattagGTACCTGTAACCGGTTTGAAGACACCCTTCCGGGATGGATATGTAAGAGAT
EST: ACATGACCTCTGATTGGACAAATGAGGAACGAGAAATGCTAAGGCGAAAG GTACCTGTAACCGGTTTGAAGACACCCTTCCGGGATGGATATGTAAGAGATEST: gi|33676123|gb|CF304362.1|CF304362
genomic: ACATGACCTCTGATTGGACAAATGAGGAAAGAGAAATGCTAAGGCGAAAGgtatcttgag ... atttgattagGTACCTGTAACCGGTTTGAAGACACCCTTCCGGGATGGATATGTAAGAGAT
EST: ACATGACCTCTGATTGGACAAATGAGGAAAGAGAAATGCTAAGGCGAAAG GTACCTGTAACCGGTTTGAAGACACCCTTCCGGGATGGATATGTAAGAGATEST: gi|86900529|gb|CI298364.1|CI298364
genomic: ACATGACCTCTGATTGGACAAATGAGGAAAGAGAAATGCTAAGGCGAAAGgtatcttgag ... atttgattagGTACCTGTAACCGGTTTGAAGACACCCTTCCGGGATGGATATGTAAGAGAT
EST: ACATGACCTCTGATTGGACAAATGAGGAAAGAGAAATGCTAAGGCGAAAG GTACCTGTAACCGGTTTGAAGACACCCTTCCGGGATGGATATGTAAGAGAT
genomic: ACATGACCTCTGATTGGACAAATGAGGAAAGAGAAATGCTAAGGCGAAAGgtatcttgag ... atttgattagGTACCTGTAACCGGTTTGAAGACACCCTTCCGGGATGGATATGTAAGAGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTGGGCTGTTGTATGATGAGGAATCACTGCAAAGTATTTCGGACATGACCTCTGATTGGACAAATGAGGAAAGAGAAATGCTAAGGCGAAAGgtatcttgagttatttgtgctctctgtccctgccaagttatataatatactgttgatccataaataaacttttgttttgccttacaatcaccagtttaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA