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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACAAATGTAATGTGGGGTATGCTTTTATCAATATGACTGATCCGCAGCACATAATCCCATTCTATAAGgtatacatatcatgcatgcattactagttaagcttctccgtttttaatgtaccttccaagatctaagcatagcatatgatataacagtatttttattatt...

Basic information

species Oryza sativa
transcript LOC_Os05g01240.2
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g01240.2 (Oryza sativa), 5'ss of exon 13
lower sequence: GRMZM2G156956_T01 (Zea mays), 5'ss of exon 12
AACAAATGTAATGTGGGGTATGCTTTTATCAATATGACTGATCCGCAGCACATAATCCCATTCTATAAGgtatacatat-catgcatgcattactagttaagcttctccgtttttaatgtaccttccaagatctaagcatagcatatgatataac--agtatttttattatt---------
|| |||||||| ||||| ||||| || ||||||||||| ||||| ||||| ||| | ||||| || |||||||     |     ||| | ||  ||  | |   |    |     ||| || ||      |    || || | || ||| |  |   | |||   |  || |         
AATAAATGTAACGTGGGATATGCATTCATCAATATGACGGATCCACAGCAGATAGTTCCATTTTACAAGgtatgttcctgtgcccataccttgatacctgacagtaagggaa---aatatatctagtttaactccagaattggatgtgagaagattaactatagctgatacttctgtgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29625695|gb|CB630706.1|CB630706
EST:     ATGCTTTTATCAATATGACTGATCCGCAGCACATAATCCCATTCTATAAG                         ACATTTAATGGCAAGAAATGGGAAAAATTCAATAGTGAAAAGGTGGCGTCG
genomic: ATGCTTTTATCAATATGACTGATCCGCAGCACATAATCCCATTCTATAAGgtatacatat ... tttgctgcagACATTTAATGGCAAGAAATGGGAGAAATTCAATAGTGAAAAGGTGGCGTCG
EST: gi|33381398|gb|CF196741.1|CF196741
EST:     ATGCTTTTATCAATATGACTGATCCGCAGCACATAATCCCATTCTATAAG                         ACATTTAATGGCAAGAAATGGGAGAAATTCAATAGTGAAAAGGTGGCGTCG
genomic: ATGCTTTTATCAATATGACTGATCCGCAGCACATAATCCCATTCTATAAGgtatacatat ... tttgctgcagACATTTAATGGCAAGAAATGGGAGAAATTCAATAGTGAAAAGGTGGCGTCG
EST: gi|29674666|gb|CB670941.1|CB670941
EST:     ATGCTTTTATCAATATGACTGATCCGCAGCACATAATCCCATTCTATAAG                         ACATTTAATGGCAAGAAATGGGAGAAATTCAATAGTGAAAAGGTGGCGTCG
genomic: ATGCTTTTATCAATATGACTGATCCGCAGCACATAATCCCATTCTATAAGgtatacatat ... tttgctgcagACATTTAATGGCAAGAAATGGGAGAAATTCAATAGTGAAAAGGTGGCGTCG
EST: gi|29674667|gb|CB670942.1|CB670942
EST:     ATGCTTTTATCAATATGACTGATCCGCAGCACATAATCCCATTCTATAAG                         ACATTTAATGGCAAGAAATGGGAGAAATTCAATAGTGAAAAGGTGGCGTCG
genomic: ATGCTTTTATCAATATGACTGATCCGCAGCACATAATCCCATTCTATAAGgtatacatat ... tttgctgcagACATTTAATGGCAAGAAATGGGAGAAATTCAATAGTGAAAAGGTGGCGTCG
EST: gi|218489237|gb|FG949713.1|FG949713
EST:     ATGCTTTTATCAATATGACTGATCCGCAGCACATAATCCCATTCTATAAG                         ACATTTAATGGCAAGAAATGGGAGAAAT-CAATAGTGAAAAGGTGGCGTCG
genomic: ATGCTTTTATCAATATGACTGATCCGCAGCACATAATCCCATTCTATAAGgtatacatat ... tttgctgcagACATTTAATGGCAAGAAATGGGAGAAATTCAATAGTGAAAAGGTGGCGTCG
EST: gi|29678624|gb|CB674899.1|CB674899
EST:     ATGCTTTTATCAATATGACTGATCCGCAGCACATAATCCCATTCTATAAG                         ACATTTAATGGCAAGAAATGGGAGAAATTCAATAGTGAAAAGGTGGCGTCG
genomic: ATGCTTTTATCAATATGACTGATCCGCAGCACATAATCCCATTCTATAAGgtatacatat ... tttgctgcagACATTTAATGGCAAGAAATGGGAGAAATTCAATAGTGAAAAGGTGGCGTCG