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CTTAAATTATTGGTTTAGAGCCAGAGGAAAACTTTCTGATGATCCAGCACTGCATAGgtttgccatctaatcactataccgtgtttcttgtattatagatgattgggcacgacattaaaccatggtattacag
species | Oryza sativa |
transcript | LOC_Os04g47120.1 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: TATTGGTTTAGAGCCAGAGGAAAACTTTCTGATGATCCAGCACTGCATAG GTGTGTTGTAGCATATGCTTCGGATCTACTATATTCTGGTGTCAGCCTAAAEST: gi|58609050|gb|CK037083.1|CK037083
genomic: TATTGGTTTAGAGCCAGAGGAAAACTTTCTGATGATCCAGCACTGCATAGgtttgccatc ... ggtattacagGTGTGTTGTAGCATATGCTTCGGATCTACTATATTCTGGTGTCAGCCTAAA
EST: TATTGGTTTAGAGCCAGAGGAAAACTTTCTGATGATCCAGCACTGCATAG GTGTGTGGGAGCATATGCTTCGGATCTACTATATTCTGGTGTCAGCCTAAAEST: gi|88218896|gb|CI216894.1|CI216894
genomic: TATTGGTTTAGAGCCAGAGGAAAACTTTCTGATGATCCAGCACTGCATAGgtttgccatc ... ggtattacagGTGTGTTGTAGCATATGCTTCGGATCTACTATATTCTGGTGTCAGCCTAAA
EST: TATTGGTTTAGAGCCAGAGGAAAACTTTCTGATGATCCAGCACTGCATAG GTGTGTTGTAGCATATGCTTCGGATCTACTATATTCTGGTGTCAGCCTAAAEST: gi|29670926|gb|CB667201.1|CB667201
genomic: TATTGGTTTAGAGCCAGAGGAAAACTTTCTGATGATCCAGCACTGCATAGgtttgccatc ... ggtattacagGTGTGTTGTAGCATATGCTTCGGATCTACTATATTCTGGTGTCAGCCTAAA
EST: TATTGGTTTAGAGCCAGAGGAAAACTTTCTGATGATCCAGCACTGCATAG GTGTGTTGTAGCATATGCTTCGGATCTACTATATTCTGGTGTCAGCCTAAAEST: gi|33681707|gb|CF309946.1|CF309946
genomic: TATTGGTTTAGAGCCAGAGGAAAACTTTCTGATGATCCAGCACTGCATAGgtttgccatc ... ggtattacagGTGTGTTGTAGCATATGCTTCGGATCTACTATATTCTGGTGTCAGCCTAAA
EST: TATTGGTTTAGAGCCAGAGGAAAACTTTCTGATGATCCAGTACTGCATAG GTGTGTTGTAGCATATGCTTCGGATCTACTATATTCTGGTGTCAGCCTAAAEST: gi|66920748|gb|CX107596.1|CX107596
genomic: TATTGGTTTAGAGCCAGAGGAAAACTTTCTGATGATCCAGCACTGCATAGgtttgccatc ... ggtattacagGTGTGTTGTAGCATATGCTTCGGATCTACTATATTCTGGTGTCAGCCTAAA
EST: TATTGGTTTAGAGCCAGAGGAAAACTTTCTGATGATCCAGCACTGCATAG GTGTGTTGTAGCATATGCTTCGGATCTACTATATTCTGGTGTCAGCCTAAAEST: gi|58606846|gb|CK034879.1|CK034879
genomic: TATTGGTTTAGAGCCAGAGGAAAACTTTCTGATGATCCAGCACTGCATAGgtttgccatc ... ggtattacagGTGTGTTGTAGCATATGCTTCGGATCTACTATATTCTGGTGTCAGCCTAAA
EST: TATTGGTTTAGAGCCAGAGGAAAACTTTCTGATGATCCAGCACTGCATAG GTGTGTTGTAGCATATGCTTCGGATCTACTATATTCTGGTGTCAGCCTAAA
genomic: TATTGGTTTAGAGCCAGAGGAAAACTTTCTGATGATCCAGCACTGCATAGgtttgccatc ... ggtattacagGTGTGTTGTAGCATATGCTTCGGATCTACTATATTCTGGTGTCAGCCTAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTAAATTATTGGTTTAGAGCCAGAGGAAAACTTTCTGATGATCCAGCACTGCATAGgtttgccatctaatcactataccgtgtttcttgtattatagatgattgggcacgacattaaaccatggtattacag
- - - - - - - - - - - AGAGGA