1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
TGCATCAATGTGCAGAGAAAGAACTTCAAGTATACCTTGAAGCAGAATCTCCCTCAAAAGATTTCAATGACTTCCGTACAAAGTTGGCTGGATTAACTAGgtactacagatcattctgtttttcatgtttcctatccttattactcggatgcttgtgtcctttggaaggttttctttgattgttttgacgacatgatcactcctaattgtaaaaagatgatcatttaaatttcgtttgtttgtactatatcttcatctgaagttctctctttatttgacag
species | Oryza sativa |
transcript | LOC_Os04g41470.2 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: CCCTCAAAAGATTTCAATGACTTCCGTACAAAGTTGGCTGGATTAACTAG TGTGACTCGCAATTATTTCGAGAACCTTGTCCGGGCTTTGGAGACTGGATTEST: gi|29681156|gb|CB677431.1|CB677431
genomic: CCCTCAAAAGATTTCAATGACTTCCGTACAAAGTTGGCTGGATTAACTAGgtactacaga ... tatttgacagTGTGACTCGCAATTATTTCGAGAACCTTGTCCGGGCTTTGGAGACTGGATT
EST: CCCTCAAAAGATTTCAATGACTTCCGTACAAAGTTGGCTGGATTAACTAG TGTGACTCGCAATTATTTCGAGAACCTTGTCCGGGCTTTGGAGACTGGATTEST: gi|29614535|gb|CB619548.1|CB619548
genomic: CCCTCAAAAGATTTCAATGACTTCCGTACAAAGTTGGCTGGATTAACTAGgtactacaga ... tatttgacagTGTGACTCGCAATTATTTCGAGAACCTTGTCCGGGCTTTGGAGACTGGATT
EST: CCCTCAAAAGATTTCAATGACTTCCGTACAAAGTTGGCTGGATTAACTAG TGTGACTCGCAATTATTTCGAGAACCTTGTCCGGGCTTTGGAGACTGGATTEST: gi|29681157|gb|CB677432.1|CB677432
genomic: CCCTCAAAAGATTTCAATGACTTCCGTACAAAGTTGGCTGGATTAACTAGgtactacaga ... tatttgacagTGTGACTCGCAATTATTTCGAGAACCTTGTCCGGGCTTTGGAGACTGGATT
EST: CCCTCAAAAGATTTCAATGACTTCCGTACAAAGTTGGCTGGATTAACTAG TGTGACTCGCAATTATTTCGAGAACCTTGTCCGGGCTTTGGAGACTGGATT
genomic: CCCTCAAAAGATTTCAATGACTTCCGTACAAAGTTGGCTGGATTAACTAGgtactacaga ... tatttgacagTGTGACTCGCAATTATTTCGAGAACCTTGTCCGGGCTTTGGAGACTGGATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCATCAATGTGCAGAGAAAGAACTTCAAGTATACCTTGAAGCAGAATCTCCCTCAAAAGATTTCAATGACTTCCGTACAAAGTTGGCTGGATTAACTAGgtactacagatcattctgtttttcatgtttcctatccttattactcggatgcttgtgtcctttggaaggttttctttgattgttttgacgacatgatcactcctaattgtaaaaagatgatcatttaaatttcgtttgtttgtactatatcttcatctgaagttctctctttatttgacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA