1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
AAGCTTCCTCGATATCAAGGAATCGACTGGTATTGAGGATAAAGAATTGCGAAGAACGCTGCAATCACTTGCATGCGGTAAAGTTCGGGTTCTCCAAAAGgtgtggctctttattttatccaaatgtctaactaattttcagtagcagcttgttcagttgtcacttttattttcag
species | Oryza sativa |
transcript | LOC_Os03g57290.1 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: GAAGAACGCTGCAATCACTTGCATGCGGTAAAGTTCGGGTTCTCCAAAAG ATGCCAAAAGGGCGAGACGTAGAAGATAAGGACGAATTTGTATTTAATGAAEST: gi|87029771|gb|CI274452.1|CI274452
genomic: GAAGAACGCTGCAATCACTTGCATGCGGTAAAGTTCGGGTTCTCCAAAAGgtgtggctct ... ttattttcagATGCCAAAAGGGCGAGACGTAGAAGATAAGGACGAATTTGTATTTAATGAA
EST: GAAGAACGCTGCAATCACTTGCATGCGGTAAAGTTCGGGTTCTCCAAAAG ATGCCAAAAGGGCGAGACGTAGAAGATAAGGACGAATTTGTATTTAATGAAEST: gi|58694714|gb|CK083401.1|CK083401
genomic: GAAGAACGCTGCAATCACTTGCATGCGGTAAAGTTCGGGTTCTCCAAAAGgtgtggctct ... ttattttcagATGCCAAAAGGGCGAGACGTAGAAGATAAGGACGAATTTGTATTTAATGAA
EST: GAAGAACGCTGCAATCACTTGCATGCGGTAAAGTTCGGGTTCTCCAAAAG ATGCCAAAAGGGCGAGACGTAGAAGATAAGGACGAATTTGTATTTAATGAAEST: gi|87013825|gb|CI271216.1|CI271216
genomic: GAAGAACGCTGCAATCACTTGCATGCGGTAAAGTTCGGGTTCTCCAAAAGgtgtggctct ... ttattttcagATGCCAAAAGGGCGAGACGTAGAAGATAAGGACGAATTTGTATTTAATGAA
EST: GAAGAACGCTGCAATCACTTGCATGCGGTAAAGTTCGGGTTCTCCAAAAG ATGCCAAAAGGGCGAGACGTAGAAGATAAGGACGAATTTGTATTTAATGAAEST: gi|89187076|gb|CI047143.1|CI047143
genomic: GAAGAACGCTGCAATCACTTGCATGCGGTAAAGTTCGGGTTCTCCAAAAGgtgtggctct ... ttattttcagATGCCAAAAGGGCGAGACGTAGAAGATAAGGACGAATTTGTATTTAATGAA
EST: TGCGGTAAAGTTCGGGTTCTCCAAAAG ATGCCAAAAGGGCGAGACGTAGAAGATAAGGACGAATTTGTATTTAATGAAEST: gi|86482476|gb|CI125109.1|CI125109
genomic: TGCGGTAAAGTTCGGGTTCTCCAAAAGgtgtggctct ... ttattttcagATGCCAAAAGGGCGAGACGTAGAAGATAAGGACGAATTTGTATTTAATGAA
EST: GAAGAACGCTGCAATCACTTGCATGCGGTAAAGTTCGGGTTCTCCAAAAG ATGCCAAAAGGGCGAGACGTAGAAGATAAGGACGAATTTGTATTTAATGAAEST: gi|38568751|gb|CD670966.1|CD670966
genomic: GAAGAACGCTGCAATCACTTGCATGCGGTAAAGTTCGGGTTCTCCAAAAGgtgtggctct ... ttattttcagATGCCAAAAGGGCGAGACGTAGAAGATAAGGACGAATTTGTATTTAATGAA
EST: GAAGAACGCTGCAATCACTTGCATGCGGTAAAGTTCGGGTTCTCCAAAAG ATGCCAAAAGGGCGAGACGTAGAAGATAAGGACGAATTTGTATTTAATGAAEST: gi|88844604|gb|CI020451.1|CI020451
genomic: GAAGAACGCTGCAATCACTTGCATGCGGTAAAGTTCGGGTTCTCCAAAAGgtgtggctct ... ttattttcagATGCCAAAAGGGCGAGACGTAGAAGATAAGGACGAATTTGTATTTAATGAA
EST: GAAGAACGCTGCAATCACTTGCATGCGGTAAAGTTCGGGTTCTCCAAAAG ATGCCAAAAGGGCGAGACGTAGAAGATAAGGACGAATTTGTATTTAATGAA
genomic: GAAGAACGCTGCAATCACTTGCATGCGGTAAAGTTCGGGTTCTCCAAAAGgtgtggctct ... ttattttcagATGCCAAAAGGGCGAGACGTAGAAGATAAGGACGAATTTGTATTTAATGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGCTTCCTCGATATCAAGGAATCGACTGGTATTGAGGATAAAGAATTGCGAAGAACGCTGCAATCACTTGCATGCGGTAAAGTTCGGGTTCTCCAAAAGgtgtggctctttattttatccaaatgtctaactaattttcagtagcagcttgttcagttgtcacttttattttcag
- - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC