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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTTCTCCTACCTGGCCTTTTCTGCCACCGCGGCGTTCATGCAACATCTAATTTTATATTTTTGGAACCGCTTCGAGgtatgctaatatgcatttttacctgtgtatttcctgttctttattttggacttatcagtcattactgcttgtttattgctttggcctgcaattttttttt...

Basic information

species Oryza sativa
transcript LOC_Os03g45770.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g45770.2 (Oryza sativa), 5'ss of exon 12
lower sequence: GRMZM5G814310_T02 (Zea mays), 5'ss of exon 3
-----------------------GCTTCTCCTACCTGGCCTTTTCTGCCACCGCGGCGTTCATGCAACATCTAATTTTATATTTTTGGAACCGCTTCGAGgtatgctaatatgcatttttacctgtgtatttcctgttctttattttggacttatcagtcattactgcttgtttattgctttggcctgcaattttttttt-------
                       ||||||| || ||||| || ||||| || || || |||||||| || || |||||||||||||||||||| || |||||| | |||| |    |  |  |||||| |||    |||||||| |    ||| | | ||  | |  |      |   |  || |||   |  | |           
CTTTATGACTTATGCTTTACCAGGCTTCTCATATCTGGCTTTCTCTGCTACGGCAGCATTCATGCAGCACCTGATTTTATATTTTTGGAACCGTTTTGAGgtaagttaatgt---ctcatttctgtgtttttgtatttctttatctaatgcttgttactctctccgtccc----aaaacagtgaccttataggtctgggcacgggaa

upper sequence: LOC_Os03g45770.2 (Oryza sativa), 5'ss of exon 12
lower sequence: GRMZM5G814310_T01 (Zea mays), 5'ss of exon 4
GCTTCTCCTACCTGGCCTTTTCTGCCACCGCGGCGTTCATGCAACATCTAATTTTATATTTTTGGAACCGCTTCGAGgtatgctaatatgcatttttacctgtgtatttcctgttctttattttggacttatcagtcattactgcttgtttattgctttggcctgcaattttttttt-------
||||||| || ||||| || ||||| || || || |||||||| || || |||||||||||||||||||| || |||||| | |||| |    |  |  |||||| |||    |||||||| |    ||| | | ||  | |  |      |   |  || |||   |  | |           
GCTTCTCATATCTGGCTTTCTCTGCTACGGCAGCATTCATGCAGCACCTGATTTTATATTTTTGGAACCGTTTTGAGgtaagttaatgt---ctcatttctgtgtttttgtatttctttatctaatgcttgttactctctccgtccc----aaaacagtgaccttataggtctgggcacgggaa
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58695202|gb|CK083889.1|CK083889
EST:     CCGCGGCGTTCATGCAACATCTAATTTTATATTTTTGGAACCGCTTCGAG                         GTGCCAGCCCTTCAGAGATTCATTAGAAGCCGAGCTCACCTTCACCAACAA
genomic: CCGCGGCGTTCATGCAACATCTAATTTTATATTTTTGGAACCGCTTCGAGgtatgctaat ... gttgctttagGTGCCAGCCCTTCAGAGATTCATTAGAAGCCGAGCTCACCTTCACCAACAA
EST: gi|2443167|gb|C74938.1|C74938
EST:     CCGCGGCGTTCATGCAACATCTAATTTTATATTTTTGGAACCGCTTCGAG                         GTGCCAGCCCTTCAGAGATTCATTAGAAGCCGAGCTCACCTTCACCAACAA
genomic: CCGCGGCGTTCATGCAACATCTAATTTTATATTTTTGGAACCGCTTCGAGgtatgctaat ... gttgctttagGTGCCAGCCCTTCAGAGATTCATTAGAAGCCGAGCTCACCTTCACCAACAA
EST: gi|218491801|gb|FG954125.1|FG954125
EST:     CCGCGGNGTTCATGCAACATCTAATTTTATATTTTTGGAACCGCTTCGAG                         GTGCCAGCCCTTCAGAGATTCATTAGAAGCCGAGCTCACCTTCACCAACAA
genomic: CCGCGGCGTTCATGCAACATCTAATTTTATATTTTTGGAACCGCTTCGAGgtatgctaat ... gttgctttagGTGCCAGCCCTTCAGAGATTCATTAGAAGCCGAGCTCACCTTCACCAACAA