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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACTAGTCATGATCTGCTTTATAATCTGCAAATGCTTGAAGCTGCTTTCCATAGGCTTCCACAACCAAAGGACTCGGAGCGAGTCAAAAATTATATTCCGgtaagatcattttagtagagttgttatgaacaaaatattctggcgtattgttctaacttctttgtcttctgttattttcag

Basic information

species Oryza sativa
transcript LOC_Os03g44900.3
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g44900.2 (Oryza sativa), 5'ss of exon 12
lower sequence: GRMZM2G340749_T01 (Zea mays), 5'ss of exon 11
TACTAGTCATGATCTGCTTTATAATCTGCAAATGCTTGAAGCTGCTTTCCATAGGCTTCCACAACCAAAGGACTCGGAGCGAGTCAAAAATTATATTCCGgtaagatcattttagtagagt------tgttatgaacaaaatattctg--gcgtattgttctaacttctttgtcttctgttattttcag
| || ||||||||| ||||||||| ||||||||||| |||||||| ||||| | ||||||||||||||||||||| ||||| |  |||| ||| || |||||| ||   ||| |  |   |      || ||  ||     || | ||  ||  |||||||| | ||  ||  |  |  | ||||||||
TTCTGGTCATGATCAGCTTTATAACCTGCAAATGCTAGAAGCTGCATTCCACAAGCTTCCACAACCAAAGGACTCTGAGCGTGCTAAAACTTACATCCCGgtatgactttttgaagaacatggtgcctgctacaaagtttctactttgtagcccattgttcttattttcttacccgccttcattttcag

upper sequence: LOC_Os03g44900.2 (Oryza sativa), 5'ss of exon 12
lower sequence: GRMZM2G100246_T01 (Zea mays), 5'ss of exon 3
TACTAGTCATGATCTGCTTTATAATCTGCAAATGCTTGAAGCTGCTTTCCATAGGCTTCCACAACCAAAGGACTCGGAGCGAGTCAAAAATTATATTCCGgtaagatcattttagtagagttgttatgaacaaaatattctggcgtattgttctaacttctttgtcttctgttattttcag--------------------
| || ||||||||| |  |||| |||||||||||||||||||||| ||||| | ||||||||| || |||||||| ||||| |  |||| ||| ||||||||| |    ||| |      | | |   | |    || |    | | |  ||| || |      |  |||||  |||  ||                    
TTCTGGTCATGATCAGAATTATTATCTGCAAATGCTTGAAGCTGCATTCCACAAGCTTCCACAGCCCAAGGACTCTGAGCGTGCTAAAACTTACATTCCGgtatgggtttttgaaggacatgggtgcca-ctgtgtactactccctctgtttcaaattataagatgctctgtcttttctagattcatagcttttgtgacgc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33812921|gb|CF332348.1|CF332348
EST:     ATAGGCTTCCACAACCAAAGGACTCGGAGCGAGTCAAAAATTATATTCCG                         AAGCACCCTGCAGTCACCCCTGCCAGCTTCCCGCAAATTCAGGCACCTGTA
genomic: ATAGGCTTCCACAACCAAAGGACTCGGAGCGAGTCAAAAATTATATTCCGgtaagatcat ... ttattttcagAAGCACCCTGCAGTCACCCCTGCCAGCTTCCCGCAAATTCAGGCACCTGTA
EST: gi|218487618|gb|FG950215.1|FG950215
EST:     ATAGGCTTCCACAACCAAAGGACTCGGAGCGAGTCAAAAATTATATTCCG                         AAGCACCCTGCAGTCACCCCTGCCAGCTTCCCGCAAATTCAGGCACCTGTA
genomic: ATAGGCTTCCACAACCAAAGGACTCGGAGCGAGTCAAAAATTATATTCCGgtaagatcat ... ttattttcagAAGCACCCTGCAGTCACCCCTGCCAGCTTCCCGCAAATTCAGGCACCTGTA