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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATTCAGGCACCTGTAGTATCAAATCCTGCCTTTTGGGAAAGAATGGGTGGCGATTCATTATCTACGGATTTGTTGTTCTTTGCTTTCTACTATCAGCAAgtaaatttccacacttttttttcaattgttttcatctgccttgcctgcctttagaaacttccaatgagttataaactgtttgctctttctcctggcattttctgttgctttcatag

Basic information

species Oryza sativa
transcript LOC_Os03g44900.2
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g44900.2 (Oryza sativa), 5'ss of exon 13
lower sequence: GRMZM2G100246_T01 (Zea mays), 5'ss of exon 4
AATTCAGGCACCTGTAGTATCAAATCCTGCCTTTTGGGAAAGAATGGGTGGCGATTCATTATCTACGGATTTGTTGTTCTTTGCTTTCTACTATCAGCAAgtaaatttccacacttttttttcaattgttttcatctgccttgcctgcctttagaaacttccaatgagttataaactgtttgctctttctcctggcattttctgttgctttcatag
| |||||||| |  | ||||| |||||  |||||||||||||||| ||| ||||  ||||| |||| ||  || |||||||||| |||||||| || || || ||||| |     | |||   | || | || || |      ||||||       ||  ||  ||| || | | | ||| | | || ||| |  || | |   |  ||||   ||
AGTTCAGGCATCAATTGTATCGAATCCCACCTTTTGGGAAAGAATTGGTAGCGACACATTAGCTACCGACATGCTGTTCTTTGCGTTCTACTACCAACAGgtcaattttccttgctctttccaatttatatttattt------cctgcc-------accaccggtgaattttcatcagttagtttttactcgtaacaatgttctt--cttttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88662190|gb|CI466119.1|CI466119
EST:     TTTGCTTTTTACTATCAGCAA                         AACACATACCAGCAATTTTTAAGTGCCAGAGAACTAAAGAAGCAATCGTGG
genomic: TTTGCTTTCTACTATCAGCAAgtaaatttcc ... gctttcatagAACACATACCAGCAATTTTTAAGTGCCAGAGAACTAAAGAAGCAATCGTGG
EST: gi|89195186|gb|CI051299.1|CI051299
EST:     GCGATTCATNATCTACGGATTTGTTGTTCTTTGCTTTCTACTATCAGCAA                         AACACATACCAGCAATTTTTAAGTGCCAGAGAACTAAAGAAGCAATCGTGG
genomic: GCGATTCATTATCTACGGATTTGTTGTTCTTTGCTTTCTACTATCAGCAAgtaaatttcc ... gctttcatagAACACATACCAGCAATTTTTAAGTGCCAGAGAACTAAAGAAGCAATCGTGG
EST: gi|89178711|gb|CI391709.1|CI391709
EST:     GCGATTCATTATCTACGGATTTGTTGTTCTTTGCTTTCTACTATCAGCAA                         AACACATACCAGCAATTTTTAAGTGCCAGAGAACTAAAGAAGCAATCGTGG
genomic: GCGATTCATTATCTACGGATTTGTTGTTCTTTGCTTTCTACTATCAGCAAgtaaatttcc ... gctttcatagAACACATACCAGCAATTTTTAAGTGCCAGAGAACTAAAGAAGCAATCGTGG
EST: gi|86522596|gb|CI162802.1|CI162802
EST:     GCGATTCATGATCTACGGATTTGTTGTTCTTTGCTTTCTACTATCAGCAA                         AACACATACCAGCAATTTTTAAGTGCCAGAGAACTAAAGAAGCAATCGTGG
genomic: GCGATTCATTATCTACGGATTTGTTGTTCTTTGCTTTCTACTATCAGCAAgtaaatttcc ... gctttcatagAACACATACCAGCAATTTTTAAGTGCCAGAGAACTAAAGAAGCAATCGTGG
EST: gi|29630459|gb|CB635468.1|CB635468
EST:     GCGATTCATTATCTACGGATTTGTTGTTCTTTGCTTTCTACTATCAGCAA                         AACACATACCAGCAATTTTTAAGTGCCAGAGAACTAAAGAAGCAATCGTGG
genomic: GCGATTCATTATCTACGGATTTGTTGTTCTTTGCTTTCTACTATCAGCAAgtaaatttcc ... gctttcatagAACACATACCAGCAATTTTTAAGTGCCAGAGAACTAAAGAAGCAATCGTGG
EST: gi|88663021|gb|CI477176.1|CI477176
EST:     TACGGATTTGTTGTTCTTTGCTTTCTACTATCAGCAA                         AACACATACCAGCAATTTTTAAGTGCCAGAGAACTAAAGAAGCAATCGTGG
genomic: TACGGATTTGTTGTTCTTTGCTTTCTACTATCAGCAAgtaaatttcc ... gctttcatagAACACATACCAGCAATTTTTAAGTGCCAGAGAACTAAAGAAGCAATCGTGG
EST: gi|8527420|gb|AU092235.1|AU092235
EST:     GCGATTCATTATCTACGGATTTGTTGTTCTTTGCTTTCTACTATCAGCAA                         AACACATACCAGCAATTTTTAAGTGCCAGAGAACTAAAGAAGCAATCGTGG
genomic: GCGATTCATTATCTACGGATTTGTTGTTCTTTGCTTTCTACTATCAGCAAgtaaatttcc ... gctttcatagAACACATACCAGCAATTTTTAAGTGCCAGAGAACTAAAGAAGCAATCGTGG
EST: gi|88268296|gb|CI378231.1|CI378231
EST:     GCGATTCATTATCTACGGATTTGTTGTTCTTTGCTTTCTACTATCAGCAA                         AACACATACCAGCAATTTTTAAGTGCCAGAGAACTAAAGAAGCAATCGTGG
genomic: GCGATTCATTATCTACGGATTTGTTGTTCTTTGCTTTCTACTATCAGCAAgtaaatttcc ... gctttcatagAACACATACCAGCAATTTTTAAGTGCCAGAGAACTAAAGAAGCAATCGTGG
EST: gi|88469340|gb|CI406611.1|CI406611
EST:     TACTATCAGCCA                         AACACATACCAGCAATTTTTAAGTGCCAGAGAACTAAAGAAGCAATCGTGG
genomic: TACTATCAGCAAgtaaatttcc ... gctttcatagAACACATACCAGCAATTTTTAAGTGCCAGAGAACTAAAGAAGCAATCGTGG
EST: gi|88275469|gb|CI395320.1|CI395320
EST:     GCGATTCATTATCTACGGATTTGTTGTTCTTTGCTTTCTACTATCAGCAA                         AACACATACCAGCAATTTTTAAGTGCCAGAGAACTAAAGAAGCAATCGTGG
genomic: GCGATTCATTATCTACGGATTTGTTGTTCTTTGCTTTCTACTATCAGCAAgtaaatttcc ... gctttcatagAACACATACCAGCAATTTTTAAGTGCCAGAGAACTAAAGAAGCAATCGTGG
EST: gi|88524842|gb|CI453795.1|CI453795
EST:     TGTTCTTTGCTTTTTACTATCAGCAA                         AACACATACCAGCAATTTTTAAGTGCCAGAGAACTAAAGAAGCAATCGTGG
genomic: TGTTCTTTGCTTTCTACTATCAGCAAgtaaatttcc ... gctttcatagAACACATACCAGCAATTTTTAAGTGCCAGAGAACTAAAGAAGCAATCGTGG
EST: gi|88663563|gb|CI483262.1|CI483262
EST:     ACTATCAGCAA                         AACACATACCAGCAATTTTTAAGTGCCAGAGAACTAAAGAAGCAATCGTGG
genomic: ACTATCAGCAAgtaaatttcc ... gctttcatagAACACATACCAGCAATTTTTAAGTGCCAGAGAACTAAAGAAGCAATCGTGG
EST: gi|33812923|gb|CF332349.1|CF332349
EST:     GCGATTCATTATCTACGGATTTGTTGTTCTTTGCTTTCTACTATCAGCAA                         AACACATACCAGCAATTTTTAAGTGCCAGAGAACTAAAGAAGCAATCGTGG
genomic: GCGATTCATTATCTACGGATTTGTTGTTCTTTGCTTTCTACTATCAGCAAgtaaatttcc ... gctttcatagAACACATACCAGCAATTTTTAAGTGCCAGAGAACTAAAGAAGCAATCGTGG
EST: gi|29676310|gb|CB672585.1|CB672585
EST:     GCGATTCATTATCTACGGATTTGTTGTTCTTTGCTTTCTACTATCAGCAA                         AACACATACCAGCAATTTTTAAGTGCCAGAGAACTAAAGAAGCAATCGTGG
genomic: GCGATTCATTATCTACGGATTTGTTGTTCTTTGCTTTCTACTATCAGCAAgtaaatttcc ... gctttcatagAACACATACCAGCAATTTTTAAGTGCCAGAGAACTAAAGAAGCAATCGTGG
EST: gi|4715388|gb|AU056505.1|AU056505
EST:     CGATTCATTATCTACGGATTTGTTGTTCTTTGCTTTCTACTATCCAGCAA                         AACACATACCAGCAATTTTTAAGTGCCAGAGAACTAAAGAAGCAATCGTG
genomic: CGATTCATTATCTACGGATTTGTTGTTCTTTGCTTTCTACTAT-CAGCAAgtaaatttcc ... gctttcatagAACACATACCAGCAATTTTTAAGTGCCAGAGAACTAAAGAAGCAATCGTG
EST: gi|29667066|gb|CB663341.1|CB663341
EST:     GCGATTCATTATCTACGGATTTGTTGTTCTTTGCTTTCTACTATCAGCAA                         AACACATACCAGCAATTTTTAAGTGCCAGAGAACTAAAGAAGCAATCGTGG
genomic: GCGATTCATTATCTACGGATTTGTTGTTCTTTGCTTTCTACTATCAGCAAgtaaatttcc ... gctttcatagAACACATACCAGCAATTTTTAAGTGCCAGAGAACTAAAGAAGCAATCGTGG
EST: gi|218487618|gb|FG950215.1|FG950215
EST:     GCGATTCATTATCTACGGATTTGTTGTTCTTTGCTTTCTACTATCAGCAA                         AACACATACCAGCAATTTTTAAGTGCCAGAGAACT
genomic: GCGATTCATTATCTACGGATTTGTTGTTCTTTGCTTTCTACTATCAGCAAgtaaatttcc ... gctttcatagAACACATACCAGCAATTTTTAAGTGCCAGAGAACT
EST: gi|86840245|gb|CI342475.1|CI342475
EST:     GCGATTCATTATCTACGGATTTGTTGTTCTTTGCTTTCTACTATCAGCAA                         AACACATACCAGCAATTTTTAAGTGCCAGAGAACTAAAGAAGCAATCGTGG
genomic: GCGATTCATTATCTACGGATTTGTTGTTCTTTGCTTTCTACTATCAGCAAgtaaatttcc ... gctttcatagAACACATACCAGCAATTTTTAAGTGCCAGAGAACTAAAGAAGCAATCGTGG