1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
GTGGATTCGACCTGGACATCTTTTCACTTGTGGGCCTGGCTCTTACAAAATACCCTCTGTAAATGATATACCTCTAAACTTCAAGGTCTCACTTTTGAAGgtaaacttcatttttacttggaaaacaggactttcttgaatttaattcagattagtaaaatgtgtttatgacattttttacattataactgagtttctct...
species | Oryza sativa |
transcript | LOC_Os03g31550.1 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: TACCCTCTGTAAATGATATACCTCTAAACTTCAAGGTCTCACTTTTGAAG GGCGTTTCGAATCCAAAGGTCATTCACTCATCCAAGGCTGTAGGAGAGCCAEST: gi|38468990|gb|CF953121.1|CF953121
genomic: TACCCTCTGTAAATGATATACCTCTAAACTTCAAGGTCTCACTTTTGAAGgtaaacttca ... ttcgttacagGGCGTTTTGAATCCAAAGGTCATTCACTCATCCAAGGCTGTAGGAGAGCCA
EST: TACCCTCTGTAAATGATATACCTCTAAACTTCAAGGTCTCACTTTTGAAG TEST: gi|38468990|gb|CF953121.1|CF953121
genomic: TACCCTCTGTAAATGATATACCTCTAAACTTCAAGGTCTCACTTTTGAAGgtaaacttca ... ttcgttacag-
EST: TACCCTCTGTAAATGATATACCTCTAAACTTCAAGGTCTCACTTTTGAAG TEST: gi|86892453|gb|CI332353.1|CI332353
genomic: TACCCTCTGTAAATGATATACCTCTAAACTTCAAGGTCTCACTTTTGAAGgtaaacttca ... ttcgttacag-
EST: TGATATACCTCTAAACTTCAAGGTCTCACTTTTGAAG GGCGTTTTGAATCCAAAGGTCATTCACTCATCCAAGGCTGTAGGAGAGCCAEST: gi|88840157|gb|CI079611.1|CI079611
genomic: TGATATACCTCTAAACTTCAAGGTCTCACTTTTGAAGgtaaacttca ... ttcgttacagGGCGTTTTGAATCCAAAGGTCATTCACTCATCCAAGGCTGTAGGAGAGCCA
EST: TACCCTCTGTAAATGATATACCTCTAAACTTCAAGGTCTCACTTTTGAAG GGCGTTTTGAACCCAAAGGTCATTCACTCATCCAAGGCTGTAGGAGAGCCAEST: gi|88842795|gb|CI371695.1|CI371695
genomic: TACCCTCTGTAAATGATATACCTCTAAACTTCAAGGTCTCACTTTTGAAGgtaaacttca ... ttcgttacagGGCGTTTTGAATCCAAAGGTCATTCACTCATCCAAGGCTGTAGGAGAGCCA
EST: TCAAGGTCTCACTTTTGAA- GGCGTTTTGAATCCAAAGGTCATTCACTCATCCAAGGCTTTAGGAGAGCCAEST: gi|8856279|gb|AU093597.1|AU093597
genomic: TCAAGGTCTCACTTTTGAAGgtaaacttca ... ttcgttacagGGCGTTTTGAATCCAAAGGTCATTCACTCATCCAAGGCTGTAGGAGAGCCA
EST: TACCCTCTGTAAATGATATACCTCTAAACTTCAAGGTCTCACTTTTGAAG GGCGTTTTGAATCCAAAGGTCATTCACTCATCCAAGGCTGTAGGAGAGCCAEST: gi|86522508|gb|CI162714.1|CI162714
genomic: TACCCTCTGTAAATGATATACCTCTAAACTTCAAGGTCTCACTTTTGAAGgtaaacttca ... ttcgttacagGGCGTTTTGAATCCAAAGGTCATTCACTCATCCAAGGCTGTAGGAGAGCCA
EST: TTCAAGGTCTCACTTTTGAAG GGCGTTTTGAATCCAAAGGTCATTCAGTCATCCAAGGCTGTAGGAGAGCCAEST: gi|88451228|gb|CI534221.1|CI534221
genomic: TTCAAGGTCTCACTTTTGAAGgtaaacttca ... ttcgttacagGGCGTTTTGAATCCAAAGGTCATTCACTCATCCAAGGCTGTAGGAGAGCCA
EST: ATATACCTCTAAACTTCAAGGTCTCACTTTTGAAG GGCGTTTTGAATCCAAAGNTCATTCACTCATCCAAGGCTGTAGGAGAGCCAEST: gi|218479236|gb|FG969139.1|FG969139
genomic: ATATACCTCTAAACTTCAAGGTCTCACTTTTGAAGgtaaacttca ... ttcgttacagGGCGTTTTGAATCCAAAGGTCATTCACTCATCCAAGGCTGTAGGAGAGCCA
EST: TACCCTCTGTAAATGATATACCTCTAAACTTCAAGGTCTCACTTTTGAAG GGCGTTTCGAATCCAAAGGTCATTCACTCATCCAAGGCTGTAGGAGAGCCAEST: gi|88830955|gb|CI080379.1|CI080379
genomic: TACCCTCTGTAAATGATATACCTCTAAACTTCAAGGTCTCACTTTTGAAGgtaaacttca ... ttcgttacagGGCGTTTTGAATCCAAAGGTCATTCACTCATCCAAGGCTGTAGGAGAGCCA
EST: TGTAAATGATATACCTCTAAACTTCAAGGTCTCACTTTTGAAG GGCGTTTTGAATCCAAAGGTCATTCACTCATCCAAGGCTGTAGGAGAGCCAEST: gi|29624755|gb|CB629766.1|CB629766
genomic: TGTAAATGATATACCTCTAAACTTCAAGGTCTCACTTTTGAAGgtaaacttca ... ttcgttacagGGCGTTTTGAATCCAAAGGTCATTCACTCATCCAAGGCTGTAGGAGAGCCA
EST: TACCCTCTGTAAATGATATACCTCTAAACTTCAAGGTCTCACTTTTGAAG GGCGTTTCGAATCCAAAGGTCATTCACTCATCCAAGGCTGTAGGAGAGCCAEST: gi|29675057|gb|CB671332.1|CB671332
genomic: TACCCTCTGTAAATGATATACCTCTAAACTTCAAGGTCTCACTTTTGAAGgtaaacttca ... ttcgttacagGGCGTTTTGAATCCAAAGGTCATTCACTCATCCAAGGCTGTAGGAGAGCCA
EST: TACCCTCTGTAAATGATATACCTCTAAACTTCAAGGTCTCACTTTTGAAG GGCGTTTTGAATCCAAAGGTCATTCACTCATCCAAGGCTGTAGGAGAGCCAEST: gi|88255785|gb|CI353656.1|CI353656
genomic: TACCCTCTGTAAATGATATACCTCTAAACTTCAAGGTCTCACTTTTGAAGgtaaacttca ... ttcgttacagGGCGTTTTGAATCCAAAGGTCATTCACTCATCCAAGGCTGTAGGAGAGCCA
EST: TAAATGATATACCTCTAAACTTCAAGGTCTCACTTTTGAAGG GGCCTTTTGAATCCAAAGGTCATTCAATCATCCAAGGCTGTAGGAGAACCEST: gi|5002750|gb|AU067859.1|AU067859
genomic: TAAATGATATACCTCTAAACTTCAAGGTCTCACTTTTGAA-Ggtaaacttca ... ttcgttacagGGCGTTTTGAATCCAAAGGTCATTCACTCATCCAAGGCTGTAGGAGAGCC
EST: CCCTCTGTAAATGGATATACCTCTAAACTTCCAAGGTCTCACTTTTGAAG GGCGTTTTGAATCCAAAGGTCATTCACTCATCCAAGGCTGTAGGAGAGCCAEST: gi|89176226|gb|CI043247.1|CI043247
genomic: CCCTCTGTAAAT-GATATACCTCTAAACTT-CAAGGTCTCACTTTTGAAGgtaaacttca ... ttcgttacagGGCGTTTTGAATCCAAAGGTCATTCACTCATCCAAGGCTGTAGGAGAGCCA
EST: TCTCACTTTTGAAG GGCGTTTTGAATCCCAAGGTCATTCACTCATCCAAGGCTGTAGGAGAGCCAEST: gi|86884878|gb|CI314454.1|CI314454
genomic: TCTCACTTTTGAAGgtaaacttca ... ttcgttacagGGCGTTTTGAATCCAAAGGTCATTCACTCATCCAAGGCTGTAGGAGAGCCA
EST: AAATCATATACCTGTAAAGTTCAAGGTCTCACTTTTGAA- GGCGTTTTGAATCCAAAGGTCATTCACTCATCC-AGGCTGTAGGAGAGCCAEST: gi|86862634|gb|CI345638.1|CI345638
genomic: AAATGATATACCTCTAAACTTCAAGGTCTCACTTTTGAAGgtaaacttca ... ttcgttacagGGCGTTTTGAATCCAAAGGTCATTCACTCATCCAAGGCTGTAGGAGAGCCA
EST: TACCCTCTGTAAATGATATACCTGTAAACTTCAA-GTCTCACTTTTGAAG GGCGTTTTGAATCCAAAGGTCATTCACTCATCCAAGGCTGTAGGAGAGCCAEST: gi|88840156|gb|CI079610.1|CI079610
genomic: TACCCTCTGTAAATGATATACCTCTAAACTTCAAGGTCTCACTTTTGAAGgtaaacttca ... ttcgttacagGGCGTTTTGAATCCAAAGGTCATTCACTCATCCAAGGCTGTAGGAGAGCCA
EST: TACCCTCTGTAAATGATATACCTCTAAACTTCAAGGTCTCACTTTTGAAG GGCGTTTTGAACCCAAAGGTCATTCACTCATCCAAGGCTGTAGGAGAGCCAEST: gi|89188109|gb|CI115358.1|CI115358
genomic: TACCCTCTGTAAATGATATACCTCTAAACTTCAAGGTCTCACTTTTGAAGgtaaacttca ... ttcgttacagGGCGTTTTGAATCCAAAGGTCATTCACTCATCCAAGGCTGTAGGAGAGCCA
EST: AGGTCTCACTTTTGAAG GGCGTTTTGAATCCCAAGGTCATTCACTCATCCAAGGCTGTAGGAGAGCCAEST: gi|86833694|gb|CI337268.1|CI337268
genomic: AGGTCTCACTTTTGAAGgtaaacttca ... ttcgttacagGGCGTTTTGAATCCAAAGGTCATTCACTCATCCAAGGCTGTAGGAGAGCCA
EST: TAAACTTCAAGGTCTCACTTTTGAAG GGCGTTTTGAATCCAAAGGTCATTCACTCATCCAAGGCTGTAGGAGAGCCAEST: gi|86871944|gb|CI332116.1|CI332116
genomic: TAAACTTCAAGGTCTCACTTTTGAAGgtaaacttca ... ttcgttacagGGCGTTTTGAATCCAAAGGTCATTCACTCATCCAAGGCTGTAGGAGAGCCA
EST: GGTCTCACTTTTGAAG GGCGTTTTGAATCCAAAGGTCATTCACTCATCCAAGGCTGTAGGAGAGCCAEST: gi|86431544|gb|CI085155.1|CI085155
genomic: GGTCTCACTTTTGAAGgtaaacttca ... ttcgttacagGGCGTTTTGAATCCAAAGGTCATTCACTCATCCAAGGCTGTAGGAGAGCCA
EST: TACCCTCTGTAAATGATATACCTCTAAACTTCAAGGTCTCACTTTTGAAG GGCGTTTTGAATCCAAAGGTCATTCACTCATCCAAGGCTGTAGGAGAGCCAEST: gi|25806372|gb|CA762333.1|CA762333
genomic: TACCCTCTGTAAATGATATACCTCTAAACTTCAAGGTCTCACTTTTGAAGgtaaacttca ... ttcgttacagGGCGTTTTGAATCCAAAGGTCATTCACTCATCCAAGGCTGTAGGAGAGCCA
EST: TACCCTCTGTAAATGATATACCTCTAAACTTCAAGGTCTCACTTTTGAAG GGCGTTTCGAATCCAAAGGTCATTCACTCATCCAAGGCTGTAGGAGAGCCAEST: gi|88831031|gb|CI080455.1|CI080455
genomic: TACCCTCTGTAAATGATATACCTCTAAACTTCAAGGTCTCACTTTTGAAGgtaaacttca ... ttcgttacagGGCGTTTTGAATCCAAAGGTCATTCACTCATCCAAGGCTGTAGGAGAGCCA
EST: CCTCTAAACTTCAAGGTCTCACTTTTGAAG GGCGTTTTGAATCCAAAGGTCATTCACTCATCCAAGGCTGTAGGAGAGCCAEST: gi|86862997|gb|CI331790.1|CI331790
genomic: CCTCTAAACTTCAAGGTCTCACTTTTGAAGgtaaacttca ... ttcgttacagGGCGTTTTGAATCCAAAGGTCATTCACTCATCCAAGGCTGTAGGAGAGCCA
EST: CCCTCTGTAAATGATATACCTCTAAACTTCAAGGTCTCACTTTTGAAG GGCGTTTTGAATCCAAAGGTCATTCACTCATCCAAGGCTTTAGGAGAGCCAEST: gi|88971940|gb|CI390523.1|CI390523
genomic: CCCTCTGTAAATGATATACCTCTAAACTTCAAGGTCTCACTTTTGAAGgtaaacttca ... ttcgttacagGGCGTTTTGAATCCAAAGGTCATTCACTCATCCAAGGCTGTAGGAGAGCCA
EST: CACTTTTGAAG GGCGTTGTGAATCCAAAGGTCATTCACTCATCCAA-GCTGTAGGAGAGCCAEST: gi|88834515|gb|CI077798.1|CI077798
genomic: CACTTTTGAAGgtaaacttca ... ttcgttacagGGCGTTTTGAATCCAAAGGTCATTCACTCATCCAAGGCTGTAGGAGAGCCA
EST: TACCCTCTGTAAATGATATACCTCTAAACTTCAAGGTCTCACTTTTGAAG GGCGTTTTGAATCCAAAGGTCATTCACTCATCCAAGGCTGTAGGAGAGCCAEST: gi|86430841|gb|CI083264.1|CI083264
genomic: TACCCTCTGTAAATGATATACCTCTAAACTTCAAGGTCTCACTTTTGAAGgtaaacttca ... ttcgttacagGGCGTTTTGAATCCAAAGGTCATTCACTCATCCAAGGCTGTAGGAGAGCCA
EST: TACCCTCTGTAAATGATATACCTCTAAACTTCAAGGTCTCACTTTTGAAG GGCGTTTTGAATCCAAAGGTCATTCACTCATCCAAGGCTGTAGGAGAGCCA
genomic: TACCCTCTGTAAATGATATACCTCTAAACTTCAAGGTCTCACTTTTGAAGgtaaacttca ... ttcgttacagGGCGTTTTGAATCCAAAGGTCATTCACTCATCCAAGGCTGTAGGAGAGCCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGGATTCGACCTGGACATCTTTTCACTTGTGGGCCTGGCTCTTACAAAATACCCTCTGTAAATGATATACCTCTAAACTTCAAGGTCTCACTTTTGAAGgtaaacttcatttttacttggaaaacaggactttcttgaatttaattcagattagtaaaatgtgtttatgacattttttacattataactgagtttctct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG