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ATTGCCACCATCTATGTCCATATCACAAGGGGTGATAAAGAAGGTATATTCCCAGCAGCCATCTCAAAAGATGGAAGATCATACAATGAGCAGgtctgttctcctttgttttctcccattagtttttagtctctgtgcttgtattctaataattttctatctatcgcag
species | Oryza sativa |
transcript | LOC_Os03g31400.1 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: AAGATCATACAATGAGCAG TTGTTTGCAAGTGCAGCAAATATTTTGTGGAAGATTGGGGGAGACCCCCGAEST: gi|86437875|gb|CI119795.1|CI119795
genomic: AAGATCATACAATGAGCAGgtctgttctc ... tctatcgcagTTGTTTGCAAGTGCAGCAAATATTTTGTGGAAGATTGGGGGAGACCCCCAA
EST: GTATATTCCCAGCAGCCATCTCAAAAGATGGAAGATCATACAATGAGCAG TTGTTTGCAAGTGCAGCAAATATTTTGTGGAAGATTGGGGGAGACCCCCAAEST: gi|87030958|gb|CI270106.1|CI270106
genomic: GTATATTCCCAGCAGCCATCTCAAAAGATGGAAGATCATACAATGAGCAGgtctgttctc ... tctatcgcagTTGTTTGCAAGTGCAGCAAATATTTTGTGGAAGATTGGGGGAGACCCCCAA
EST: GTATATTCCCAGCAGCCATCTCAAAAGATGGAAGATCATACAATGAGCAG TTGTTTGCAAGTGCAGCAAATATTTTGTGGAAGATTGGGGGAGACCCCCAAEST: gi|58670441|gb|CK059127.1|CK059127
genomic: GTATATTCCCAGCAGCCATCTCAAAAGATGGAAGATCATACAATGAGCAGgtctgttctc ... tctatcgcagTTGTTTGCAAGTGCAGCAAATATTTTGTGGAAGATTGGGGGAGACCCCCAA
EST: ATGGAAGATCATACAATGAGCAG TTGTTTGCAAGTGCAGCAAATATTTTGTGGAAGATTTGGGGGAGACCCCCAEST: gi|88966401|gb|CI119536.1|CI119536
genomic: ATGGAAGATCATACAATGAGCAGgtctgttctc ... tctatcgcagTTGTTTGCAAGTGCAGCAAATATTTTGTGGAAGA-TTGGGGGAGACCCCCA
EST: GTATATTCCCAGCAGCCATCTCAAAAGATGGAAGATCATACAATGAGCAG TTGTTTGCAAGTGCAGCAAATATTTTGTGGAAGATTGGGGGAGACCCCCAAEST: gi|58657166|gb|CK045846.1|CK045846
genomic: GTATATTCCCAGCAGCCATCTCAAAAGATGGAAGATCATACAATGAGCAGgtctgttctc ... tctatcgcagTTGTTTGCAAGTGCAGCAAATATTTTGTGGAAGATTGGGGGAGACCCCCAA
EST: GTATATTCCCAGCAGCCATCTCAAAAGATGGAAGATCATACAATGAGCAG TTGTTTGCAAGTGCAGCAAATATTTTGTGGAAGATTGGGGGAGACCCCCAAEST: gi|29638838|gb|CB643847.1|CB643847
genomic: GTATATTCCCAGCAGCCATCTCAAAAGATGGAAGATCATACAATGAGCAGgtctgttctc ... tctatcgcagTTGTTTGCAAGTGCAGCAAATATTTTGTGGAAGATTGGGGGAGACCCCCAA
EST: GTATATTCCCAGCAGCCATCTCAAAAGATGGAAGATCATACAATGAGCAG TTGTTTGCAAGTGCAGCAAATATTTTGTGGAAGATTGGGGGAGACCCCCAAEST: gi|87014888|gb|CI271487.1|CI271487
genomic: GTATATTCCCAGCAGCCATCTCAAAAGATGGAAGATCATACAATGAGCAGgtctgttctc ... tctatcgcagTTGTTTGCAAGTGCAGCAAATATTTTGTGGAAGATTGGGGGAGACCCCCAA
EST: GTATATTCCCAGCAGCCATCTCAAAAGATGGAAGATCATACAATGAGCAG TTGTTTGCAAGTGCAGCAAATATTTTGTGGAAGATTGGGGGAGACCCCCAA
genomic: GTATATTCCCAGCAGCCATCTCAAAAGATGGAAGATCATACAATGAGCAGgtctgttctc ... tctatcgcagTTGTTTGCAAGTGCAGCAAATATTTTGTGGAAGATTGGGGGAGACCCCCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTGCCACCATCTATGTCCATATCACAAGGGGTGATAAAGAAGGTATATTCCCAGCAGCCATCTCAAAAGATGGAAGATCATACAATGAGCAGgtctgttctcctttgttttctcccattagtttttagtctctgtgcttgtattctaataattttctatctatcgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG