1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
CTGTCGGTTATTCAGGCATTCAGTTTGATGCGGACCAGCTTGATATTTCCCTTGGAGCTATTCCACTAATGAAAAATGGTCAACCACTCCCATTTGACAGgttaagaaaccttgacaacatagaattattttttttattgacgactttgaatgaattgtaatttgtgtagatcttacaatagaatttaaaatatctactgtttcttcatag
species | Oryza sativa |
transcript | LOC_Os03g17120.2 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: CTTGGAGCTATTCCACTAATGAAAAATGGTCAACCACTCCCATTTGACAG ATCTGCGGCCAGCAAGTATCTGAAAGATGCTGGAGACATCCATGGTACAGTEST: gi|88427802|gb|CI554310.1|CI554310
genomic: CTTGGAGCTATTCCACTAATGAAAAATGGTCAACCACTCCCATTTGACAGgttaagaaac ... ttcttcatagATCTGCGGCCAGCAAGTATCTGAAAGATGCTGGAGACATCCATGGTACAGT
EST: AATGGTCAACCACTCCCATTTGACAG ATCTGCGGCCAGCAAGTATCTGAAAGATGCTGGAGACATCCATGGTACAGTEST: gi|88907071|gb|CI376143.1|CI376143
genomic: AATGGTCAACCACTCCCATTTGACAGgttaagaaac ... ttcttcatagATCTGCGGCCAGCAAGTATCTGAAAGATGCTGGAGACATCCATGGTACAGT
EST: C-TGGAGCTATTCCACTAATGAAAAATGGTCAACCACTCCCATTTGACAG ATCTGCGGCCACCAAGTATCTGAAAGATGCTGGAGACATCCATGGTACAGTEST: gi|86417804|gb|CI032013.1|CI032013
genomic: CTTGGAGCTATTCCACTAATGAAAAATGGTCAACCACTCCCATTTGACAGgttaagaaac ... ttcttcatagATCTGCGGCCAGCAAGTATCTGAAAGATGCTGGAGACATCCATGGTACAGT
EST: CTTGGAGCTATTCCACTAATGAAAAATGGTCAACCACTCCCATTTGACAG ATCTGCGGCCAGCAAGTATCTGAAAGATGCTGGAGACATCCATGGTACAGTEST: gi|86483772|gb|CI126405.1|CI126405
genomic: CTTGGAGCTATTCCACTAATGAAAAATGGTCAACCACTCCCATTTGACAGgttaagaaac ... ttcttcatagATCTGCGGCCAGCAAGTATCTGAAAGATGCTGGAGACATCCATGGTACAGT
EST: AGCTATTCCACTAATGAAAAATGGTCAACCACTCCCATTTGACAG ATCTGCGGCCAGCAAGTATCTGAAAGATGCTGGAGACATCCATGGTACAGTEST: gi|58675407|gb|CK064094.1|CK064094
genomic: AGCTATTCCACTAATGAAAAATGGTCAACCACTCCCATTTGACAGgttaagaaac ... ttcttcatagATCTGCGGCCAGCAAGTATCTGAAAGATGCTGGAGACATCCATGGTACAGT
EST: CTTGGAGCTATTCCACTAATGAAAAATGGTCAACCACTCCCATTTGACAG ATCTGCGGCCAGCAAGTATCTGAAAGATGCTGGAGACATCCATGGTACAGTEST: gi|218488450|gb|FG961506.1|FG961506
genomic: CTTGGAGCTATTCCACTAATGAAAAATGGTCAACCACTCCCATTTGACAGgttaagaaac ... ttcttcatagATCTGCGGCCAGCAAGTATCTGAAAGATGCTGGAGACATCCATGGTACAGT
EST: GGTCAACCACTCCCATTTGACAG ATCTGCGGCCAGCAAGTATCTGTAAGATGCTGGAGACATCCATGGTACAGTEST: gi|88385172|gb|CI561828.1|CI561828
genomic: GGTCAACCACTCCCATTTGACAGgttaagaaac ... ttcttcatagATCTGCGGCCAGCAAGTATCTGAAAGATGCTGGAGACATCCATGGTACAGT
EST: TAATGAAAAATGGTCAACCACTCCCATTTGACAG ATCTGCGGCCAGCAAGTATCTGAAAGATGCTGGAGACATCCATGGTACAGTEST: gi|88254735|gb|CI353559.1|CI353559
genomic: TAATGAAAAATGGTCAACCACTCCCATTTGACAGgttaagaaac ... ttcttcatagATCTGCGGCCAGCAAGTATCTGAAAGATGCTGGAGACATCCATGGTACAGT
EST: CCCATTTGACAG ATCTGCGGCCAGCAAGTATCTGAAAGATGCTGGAGACATCCATGGTACAGTEST: gi|86600773|gb|CI356530.1|CI356530
genomic: CCCATTTGACAGgttaagaaac ... ttcttcatagATCTGCGGCCAGCAAGTATCTGAAAGATGCTGGAGACATCCATGGTACAGT
EST: ATGAAAAATGGTCAACCACTCCCATTTGACAG ATCTGCGGCCAGCAAGTATCTGAAAGATGCTGGAGACATCCATGGTACAAGEST: gi|89162406|gb|CI099098.1|CI099098
genomic: ATGAAAAATGGTCAACCACTCCCATTTGACAGgttaagaaac ... ttcttcatagATCTGCGGCCAGCAAGTATCTGAAAGATGCTGGAGACATCCATGGTAC-AG
EST: CTATTCCACTAATGAAAAATGGTCAACCACTCCCATTTGACAG ATCTGCGGCCAGCAAGTATCTGAAAGATGCTGGAGACATCCATGGTACAGTEST: gi|89168167|gb|CI109371.1|CI109371
genomic: CTATTCCACTAATGAAAAATGGTCAACCACTCCCATTTGACAGgttaagaaac ... ttcttcatagATCTGCGGCCAGCAAGTATCTGAAAGATGCTGGAGACATCCATGGTACAGT
EST: CTTGGAGCTATTCCACTAATGAAAAATGGTCAACCACTCCCATTTGACAG ATCTGCGGCCAGCAAGTATCTGAAAGATGCTGGAGACATCCATGGTACAGTEST: gi|86433912|gb|CI094255.1|CI094255
genomic: CTTGGAGCTATTCCACTAATGAAAAATGGTCAACCACTCCCATTTGACAGgttaagaaac ... ttcttcatagATCTGCGGCCAGCAAGTATCTGAAAGATGCTGGAGACATCCATGGTACAGT
EST: CTTGGAGCTATTCCACTAATGAAAAATGGTCAACCACTCCCATTTGACAG ATCTGCGGCCAGCAAGTATCTGAAAGATGCTGGAGACATCCATGGTACAGTEST: gi|88263131|gb|CI366905.1|CI366905
genomic: CTTGGAGCTATTCCACTAATGAAAAATGGTCAACCACTCCCATTTGACAGgttaagaaac ... ttcttcatagATCTGCGGCCAGCAAGTATCTGAAAGATGCTGGAGACATCCATGGTACAGT
EST: CTTGGAGCTATTCCACTAATGAAAAATGGTCAACCACTCCCATTTGACAG ATCTGCGGCCAGCAAGTATCTGAAAGATGCTGGAGACATCCATGGTACAGTEST: gi|88257574|gb|CI360160.1|CI360160
genomic: CTTGGAGCTATTCCACTAATGAAAAATGGTCAACCACTCCCATTTGACAGgttaagaaac ... ttcttcatagATCTGCGGCCAGCAAGTATCTGAAAGATGCTGGAGACATCCATGGTACAGT
EST: ACCACTCCCATTTGACAG ATCTGCGGCCAGCAAGTATCTGAAAGATGCTGGAGACATCCATGGTACAGTEST: gi|86490354|gb|CI132987.1|CI132987
genomic: ACCACTCCCATTTGACAGgttaagaaac ... ttcttcatagATCTGCGGCCAGCAAGTATCTGAAAGATGCTGGAGACATCCATGGTACAGT
EST: CTGGGAGCTATTCCACTAATGAAAAATGGTCAACCACTCCCATTTGACAG ATCTGCGGCCAGCAAGTATCTGAAAGATGCTGGAGACATCCATGGTACAGT
genomic: CTTGGAGCTATTCCACTAATGAAAAATGGTCAACCACTCCCATTTGACAGgttaagaaac ... ttcttcatagATCTGCGGCCAGCAAGTATCTGAAAGATGCTGGAGACATCCATGGTACAGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGTCGGTTATTCAGGCATTCAGTTTGATGCGGACCAGCTTGATATTTCCCTTGGAGCTATTCCACTAATGAAAAATGGTCAACCACTCCCATTTGACAGgttaagaaaccttgacaacatagaattattttttttattgacgactttgaatgaattgtaatttgtgtagatcttacaatagaatttaaaatatctactgtttcttcatag
- - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT