1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' |
ATTGATGCGCATGTCGGTGGTGTAAATGACATTGCATTTGCCCATCCAAATAAGCAGCTATGTATAATAACCTGCGGAGATGACAAGACAATTAAGgtgagtttctgtgattgcatgagttctgggactgaaagtctctttgtttaacccagaagtgctaagttttatgggcaccatattctag
species | Oryza sativa |
transcript | LOC_Os03g14980.1 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: CAAATAAGCAGCTATGTATAATAACCTGCGGAGATGACAAGACAATTAAG GTCTGGGAGGCCACTAGTGGAGCAAAGCAATTTACATTTGAAGGTCATGAAEST: gi|88356140|gb|CI627588.1|CI627588
genomic: CAAATAAGCAGCTATGTATAATAACCTGCGGAGATGACAAGACAATTAAGgtgagtttct ... catattctagGTCTGGGAGGCCACTAGTGGAGCAAAGCAATTTACATTTGAAGGTCATGAA
EST: CAAATAAGCAGCTATGTATAATAACCTGCGGAGATGACAAGACAATTAAG GTCTGGGAGGCCACTAGTGGAGCAAAGCAATTTACATTTGAAGGTCATGAAEST: gi|29628402|gb|CB633413.1|CB633413
genomic: CAAATAAGCAGCTATGTATAATAACCTGCGGAGATGACAAGACAATTAAGgtgagtttct ... catattctagGTCTGGGAGGCCACTAGTGGAGCAAAGCAATTTACATTTGAAGGTCATGAA
EST: CAAATAAGCAGCTATGTATAATAACCTGCGGAGATGACAAGACAATTAAG GTCTGGGAGGCCACTAGTGGAGCAAAGCAATTTACATTTGAAGGTCATGAAEST: gi|29671653|gb|CB667928.1|CB667928
genomic: CAAATAAGCAGCTATGTATAATAACCTGCGGAGATGACAAGACAATTAAGgtgagtttct ... catattctagGTCTGGGAGGCCACTAGTGGAGCAAAGCAATTTACATTTGAAGGTCATGAA
EST: CAAATAAGCAGCTATGTATAATAACCTGCGGAGATGACAAGACAATTAAG GTCTGGGAGGCCACTAGTGGAGCAAAGCAATTTACATTTGAAGGTCATGAAEST: gi|29625346|gb|CB630357.1|CB630357
genomic: CAAATAAGCAGCTATGTATAATAACCTGCGGAGATGACAAGACAATTAAGgtgagtttct ... catattctagGTCTGGGAGGCCACTAGTGGAGCAAAGCAATTTACATTTGAAGGTCATGAA
EST: CAAATAAGCAGCTATGTATAATAACCTGCGGAGATGACAAGACAATTAAG GTCTGGGAGGCCACTAGTGGAGCAAAGCAATTTACATTTGAAAGTCATGAAEST: gi|58667991|gb|CK056677.1|CK056677
genomic: CAAATAAGCAGCTATGTATAATAACCTGCGGAGATGACAAGACAATTAAGgtgagtttct ... catattctagGTCTGGGAGGCCACTAGTGGAGCAAAGCAATTTACATTTGAAGGTCATGAA
EST: CAAATAAGCAGCTATGTATAATAACCTGCGGAGATGACAAGACAATTAAG GTCTGGGAGGCCACTAGTGGAGCAAAGCAATTTACATTTGAAGGTCATGAAEST: gi|29622174|gb|CB627185.1|CB627185
genomic: CAAATAAGCAGCTATGTATAATAACCTGCGGAGATGACAAGACAATTAAGgtgagtttct ... catattctagGTCTGGGAGGCCACTAGTGGAGCAAAGCAATTTACATTTGAAGGTCATGAA
EST: CAAATAAGCAGCTATGTATAATAACCTGCGGAGATGACAAGACAATTAAG GTCTGGGAGGCCACTAGTGGAGCAAAGCAATTTACATTTGAAGGTCATGAAEST: gi|29631515|gb|CB636524.1|CB636524
genomic: CAAATAAGCAGCTATGTATAATAACCTGCGGAGATGACAAGACAATTAAGgtgagtttct ... catattctagGTCTGGGAGGCCACTAGTGGAGCAAAGCAATTTACATTTGAAGGTCATGAA
EST: CAAATAAGCAGCTATGTATAATAACCTGCGGAGATGACAAGACAATTAAGG GTCTGGGAGGCCACTAGTGGAGCAAAGCAATTTACATTTGAAGGTCATGAEST: gi|163927939|gb|EG712951.1|EG712951
genomic: CAAATAAGCAGCTATGTATAATAACCTGCGGAGATGACAAGACAATTAA-Ggtgagtttct ... catattctagGTCTGGGAGGCCACTAGTGGAGCAAAGCAATTTACATTTGAAGGTCATGA
EST: CAAATAAGCAGCTATGTATAATAACCTGCGGAGATGACAAGACAATTAAG GTCTGGGAGGCCACTAGTGGAGCAAAGCAATTTACATTTGAAGGTCATGAA
genomic: CAAATAAGCAGCTATGTATAATAACCTGCGGAGATGACAAGACAATTAAGgtgagtttct ... catattctagGTCTGGGAGGCCACTAGTGGAGCAAAGCAATTTACATTTGAAGGTCATGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTGATGCGCATGTCGGTGGTGTAAATGACATTGCATTTGCCCATCCAAATAAGCAGCTATGTATAATAACCTGCGGAGATGACAAGACAATTAAGgtgagtttctgtgattgcatgagttctgggactgaaagtctctttgtttaacccagaagtgctaagttttatgggcaccatattctag
- - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG