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TGTAGGGATCAGAAGTGAAAACATAAAGTCATCCTTAACTCCACATGAAAAGGCAGGCATTATAACTGCATTGCAAGGAGAGGGACGTCGGGTTGCAATGgtaatgctctgtgatgtgcttttatctattattgacagcacgtacagttgttgctagtctatggcatactgaaattgcctgcactaaaattattccgcgt...
species | Oryza sativa |
transcript | LOC_Os03g08070.1 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: AGGCAGGCATTATAACTGCATTGCAAGGAGAGGGACGTCGGGTTGCAATG GTTGGGGATGGAATAAATGATGCACCATCTTTAGCAGCTGCTGATGTGGGAEST: gi|116875017|gb|EC365525.1|EC365525
genomic: AGGCAGGCATTATAACTGCATTGCAAGGAGAGGGACGTCGGGTTGCAATGgtaatgctct ... tgttgcatagGTTGGGGATGGAATAAATGATGCACCATCTTTAGCAGCTGCTGATGTGGGA
EST: AGGCAGGCATTATAACTGCATTGCAAGGAGAGGGACGTCGGGTTGCAATG GTTGGGGATGGAATAAATGATGCACCATCTTTAGCAGCTGCTGATGTGGGAEST: gi|29622947|gb|CB627958.1|CB627958
genomic: AGGCAGGCATTATAACTGCATTGCAAGGAGAGGGACGTCGGGTTGCAATGgtaatgctct ... tgttgcatagGTTGGGGATGGAATAAATGATGCACCATCTTTAGCAGCTGCTGATGTGGGA
EST: AGGCAGGCATTATAACTGCATTGCAAGGAGAGGGACGTCGGGTTGCAATG GTTGGGGATGGAATAAATGATGCACCATCTTTAGCAGCTGCTGATGTGGGAEST: gi|29662866|gb|CB659141.1|CB659141
genomic: AGGCAGGCATTATAACTGCATTGCAAGGAGAGGGACGTCGGGTTGCAATGgtaatgctct ... tgttgcatagGTTGGGGATGGAATAAATGATGCACCATCTTTAGCAGCTGCTGATGTGGGA
EST: AGGCAGGCATTATAACTGCATTGCAAGGAGAGGGACGTCGGGTTGCAATG GTTGGGGATGGAATAAATGATGCACCATCTTTAGCAGCTGCTGATGTGGGAEST: gi|116875544|gb|EC366052.1|EC366052
genomic: AGGCAGGCATTATAACTGCATTGCAAGGAGAGGGACGTCGGGTTGCAATGgtaatgctct ... tgttgcatagGTTGGGGATGGAATAAATGATGCACCATCTTTAGCAGCTGCTGATGTGGGA
EST: AGGCAGGCATTATAACTGCATTGCAAGGAGAGGGACGTCGGGTTGCAATG GTTGGGGATGGAATAAATGATGCACCATCTTTAGCAGCTGCTGATGTGGGAEST: gi|116875028|gb|EC365536.1|EC365536
genomic: AGGCAGGCATTATAACTGCATTGCAAGGAGAGGGACGTCGGGTTGCAATGgtaatgctct ... tgttgcatagGTTGGGGATGGAATAAATGATGCACCATCTTTAGCAGCTGCTGATGTGGGA
EST: AGGCAGGCATTATAACTGCATTGCAAGGAGAGGGACGTCGGGTTGCAATG GTTGGGGATGGAATAAATGATGCACCATCTTTAGCAGCTGCTGATGTGGGAEST: gi|87027726|gb|CI274290.1|CI274290
genomic: AGGCAGGCATTATAACTGCATTGCAAGGAGAGGGACGTCGGGTTGCAATGgtaatgctct ... tgttgcatagGTTGGGGATGGAATAAATGATGCACCATCTTTAGCAGCTGCTGATGTGGGA
EST: AGGAGAGGGACGTCGGNTTGCAATG GTTGGGGATGGAATAAATGATGCACCATCTTTAGCAGCTGCTGATGTGGGA
genomic: AGGAGAGGGACGTCGGGTTGCAATGgtaatgctct ... tgttgcatagGTTGGGGATGGAATAAATGATGCACCATCTTTAGCAGCTGCTGATGTGGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTAGGGATCAGAAGTGAAAACATAAAGTCATCCTTAACTCCACATGAAAAGGCAGGCATTATAACTGCATTGCAAGGAGAGGGACGTCGGGTTGCAATGgtaatgctctgtgatgtgcttttatctattattgacagcacgtacagttgttgctagtctatggcatactgaaattgcctgcactaaaattattccgcgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG