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GGCTACTTTTCAAGAACTGAAGAGACCTATGGCTTTGGGAGCAGTAGGGAATTCAACATCCGGGGGACAGAGAGATTTCTTTGGAGGGTTTTCAAATAAGgtataagcgagtgcttgatctgaacaatgaaaacatttaagtgttcatttaaatgcatgcatgtcattttccttttgaattgttgatgagttattggtat...
species | Oryza sativa |
transcript | LOC_Os03g06190.1 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: ATTCAACATCCGGGGGACAGAGAGATTTCTTTGGAGGGTTTTCAAATAAG TCTGAGAAGATGGAGAAGGCTAAATCCTATCCAGCCTTTTACTACCCCCAGEST: gi|58690708|gb|CK079395.1|CK079395
genomic: ATTCAACATCCGGGGGACAGAGAGATTTCTTTGGAGGGTTTTCAAATAAGgtataagcga ... ggaattgcagTCTGAGAAGATGGAGAAGGCTAAATCCTATCCAGCCTTTTACTACCCCCAG
EST: ATTCAACATCCGGGGGACAGAGAGATTTCTTTGGAGGGTTTTCAAATAAG TCTGAGAAGATGGAGAAGGCTAAATCCTATCCAGCCTTTTACTACCCCCAGEST: gi|58695118|gb|CK083805.1|CK083805
genomic: ATTCAACATCCGGGGGACAGAGAGATTTCTTTGGAGGGTTTTCAAATAAGgtataagcga ... ggaattgcagTCTGAGAAGATGGAGAAGGCTAAATCCTATCCAGCCTTTTACTACCCCCAG
EST: ATTCAACATCCGGGGGACAGAGAGATTTCTTTGGAGGGTTTTCAAATAAG TCTGAGAAGATGGAGAAGGCTAAATCCTATCCAGCCTTTTACTACCCCCAGEST: gi|27545726|gb|CA763926.2|CA763926
genomic: ATTCAACATCCGGGGGACAGAGAGATTTCTTTGGAGGGTTTTCAAATAAGgtataagcga ... ggaattgcagTCTGAGAAGATGGAGAAGGCTAAATCCTATCCAGCCTTTTACTACCCCCAG
EST: GAGAGATTTCTCTGGAGGGTTTTCAAATAAG TCTGAGAAGATGGAGAAGGCTAAATCCTATCCAGCCTTTTACTACCCCCAG
genomic: GAGAGATTTCTTTGGAGGGTTTTCAAATAAGgtataagcga ... ggaattgcagTCTGAGAAGATGGAGAAGGCTAAATCCTATCCAGCCTTTTACTACCCCCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCTACTTTTCAAGAACTGAAGAGACCTATGGCTTTGGGAGCAGTAGGGAATTCAACATCCGGGGGACAGAGAGATTTCTTTGGAGGGTTTTCAAATAAGgtataagcgagtgcttgatctgaacaatgaaaacatttaagtgttcatttaaatgcatgcatgtcattttccttttgaattgttgatgagttattggtat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG