Sequence
atgc intronic sequence ATGC exonic sequenceATGGTTGCTGGAAGATTTGTGAATGTGTACTCCACAGATGACTGGATTCTTGGTGTTACTTTTCGTGCGAGgtaaacagatttatgatttcagagctcctagaaagctcatatcaccattcccccatgtgagctatgacttaagtaatcttctcgtgcagtctgctaacacaagggttggctggcatccag
Basic information
species | Oryza sativa |
transcript | LOC_Os03g02170.3 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: LOC_Os03g02170.3 (Oryza sativa), 5'ss of exon 13
lower sequence: GRMZM2G092776_T03 (Zea mays), 5'ss of exon 15
ATGGTTGCTGGAAGATTTGTGAATGTGTACTCCACAGATGACTGGATTCTTGGTGTTACTTTTCGTGCGAGgtaaacagattta---tgatttcagagctcctagaaagctcatatc--accattcc--cccatgtgagctatgacttaagtaatcttctcgtgcagtctgctaacacaagggttggctggcatccag
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ATGGTTGCAGGGAGATTTGTGAATGTGTACTCGAGAGATGACTGGATTCTCGGTGTAACCTTCCGAGCAAGgtgaacaaagtgggattgatttc-gaattgattgatagtcagtgctggaacagttaagtcgatacctttgctgacttgc-taattctctgatgtag-------------------------------
upper sequence: LOC_Os03g02170.3 (Oryza sativa), 5'ss of exon 13
lower sequence: GRMZM2G092776_T02 (Zea mays), 5'ss of exon 13
-----------------------------ATGGTTGCTGGAAGATTTGTGAATGTGTACTCCACAGATGACTGGATTCTTGGTGTTACTTTTCGTGCGAGgtaaacagattta---tgatttcagagctcctagaaagctcatatc--accattcc--cccatgtgagctatgacttaagtaatcttctcgtgcagtctgctaacacaagggttggctggcatccag
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TCTCTTAACTAGCCTCTGCTTCACTGCAGATGGTTGCAGGGAGATTTGTGAATGTGTACTCGAGAGATGACTGGATTCTCGGTGTAACCTTCCGAGCAAGgtgaacaaagtgggattgatttc-gaattgattgatagtcagtgctggaacagttaagtcgatacctttgctgacttgc-taattctctgatgtag-------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|88227944|gb|CI227424.1|CI227424EST: AATGTGTACTCCACAGATGACTGGATTCTTGGTGTTACTTTTCGTGCGAG GCCATTGATGTCCCTGGTGTTGAAAAT
genomic: AATGTGTACTCCACAGATGACTGGATTCTTGGTGTTACTTTTCGTGCGAGgtaaacagat ... tggcatccagGCCATTGATGTCCCTGGTGTTGAAAAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATGGTTGCTGGAAGATTTGTGAATGTGTACTCCACAGATGACTGGATTCTTGGTGTTACTTTTCGTGCGAGgtaaacagatttatgatttcagagctcctagaaagctcatatcaccattcccccatgtgagctatgacttaagtaatcttctcgtgcagtctgctaacacaagggttggctggcatccag
- - - - - - - - - - - - - - - - - CAGATG