1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
GAGAATTAAGGGAGCGTTTGACTGGTCAAAATCCCGATCTTACGAAGGAGGAAAGGCTGATGATTAGAGAGTACTTGGAACAGTACGTTGAGCGATAGAGgtaagttgaaatttattcagactactagtattgtgttgcaggggttttgctgattatgcttatgcatgaacatatcattcggattggactgcactaatctgcag
species | Oryza sativa |
transcript | LOC_Os03g01750.4 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: GAAAGGCTGATGATTAGAGAGTACTTGGAACAGTACGTTGAGCGATAGAG AATTGACATTGGATTATCGACTCGTTTTGGGCTCGCTGTGCAACAGGGAAGEST: gi|29640153|gb|CB645162.1|CB645162
genomic: GAAAGGCTGATGATTAGAGAGTACTTGGAACAGTACGTTGAGCGATAGAGgtaagttgaa ... taatctgcagAATTGACATTGGATTATCGACTCGTTTTGGGCTCGCTGTGCAACAGGGAAG
EST: GAAAGGCTGATGATTAGAGAGTACTTGGAACAGTACGTTGAGCGATAGAG AATTGACATTGGATTATCGACTCGTTTTGGGCTCGCTGTGCAACAGGGAAGEST: gi|24208785|gb|AU225812.1|AU225812
genomic: GAAAGGCTGATGATTAGAGAGTACTTGGAACAGTACGTTGAGCGATAGAGgtaagttgaa ... taatctgcagAATTGACATTGGATTATCGACTCGTTTTGGGCTCGCTGTGCAACAGGGAAG
EST: GAAAGGCTGATGATTAGAGAGTACTTGGAACAGTACGTTGAGCGATAGAG AATTGACATTGGATTATCGACTCGTTTTGGGCTCGCTGTGCAACAGGGAAGEST: gi|88505802|gb|CI433308.1|CI433308
genomic: GAAAGGCTGATGATTAGAGAGTACTTGGAACAGTACGTTGAGCGATAGAGgtaagttgaa ... taatctgcagAATTGACATTGGATTATCGACTCGTTTTGGGCTCGCTGTGCAACAGGGAAG
EST: CAGTACGTTGAGCGATAGAG AATTGACATTGGATTATCGACTCGTTTTGGGCTCGCTGTGCAACAGGGAAGEST: gi|29656092|gb|CB652367.1|CB652367
genomic: CAGTACGTTGAGCGATAGAGgtaagttgaa ... taatctgcagAATTGACATTGGATTATCGACTCGTTTTGGGCTCGCTGTGCAACAGGGAAG
EST: GAAAGGCTGATGATTAGAGAGTACTTGGAACAGTACGTTGAGCGATAGAG AATTGACATTGGATTATCGACTCGTTTTGGGCTCGCTGTGCAACAGGGAAGEST: gi|88688617|gb|CI732193.1|CI732193
genomic: GAAAGGCTGATGATTAGAGAGTACTTGGAACAGTACGTTGAGCGATAGAGgtaagttgaa ... taatctgcagAATTGACATTGGATTATCGACTCGTTTTGGGCTCGCTGTGCAACAGGGAAG
EST: GAAAGGCTGATGATTAGAGAGTACTTGGAACAGTACGTTGAGCGATAGAG AATTGACATTGGATTATCGACTCGTTTTGGGCTCGCTGTGCAACAGGGAAGEST: gi|86823806|gb|CI258828.1|CI258828
genomic: GAAAGGCTGATGATTAGAGAGTACTTGGAACAGTACGTTGAGCGATAGAGgtaagttgaa ... taatctgcagAATTGACATTGGATTATCGACTCGTTTTGGGCTCGCTGTGCAACAGGGAAG
EST: GAAAGGCTGATGATTAGAGAGTACTTGGAACAGTACGTTGAGCGATAGAG AATTGACATTGGATTATCGACTCGTTTTGGGCTCGCTGTGCAACAGGGAAGEST: gi|88311093|gb|CI658006.1|CI658006
genomic: GAAAGGCTGATGATTAGAGAGTACTTGGAACAGTACGTTGAGCGATAGAGgtaagttgaa ... taatctgcagAATTGACATTGGATTATCGACTCGTTTTGGGCTCGCTGTGCAACAGGGAAG
EST: GAAAGGCTGATGATTAGAGAGTACTTGGAACAGTACGTTGAGCGATAGAG AATTGACATTGGATTATCGAEST: gi|88689968|gb|CI734047.1|CI734047
genomic: GAAAGGCTGATGATTAGAGAGTACTTGGAACAGTACGTTGAGCGATAGAGgtaagttgaa ... taatctgcagAATTGACATTGGATTATCGA
EST: GAAAGGCTGATGATTAGAGAGTACTTGGAACAGTACGTTGAGCGATAGAG AATTGACATTGGATTATCGACTCGTTTTGGGCTCGCTGTGCAACAGGGAAGEST: gi|88693785|gb|CI735362.1|CI735362
genomic: GAAAGGCTGATGATTAGAGAGTACTTGGAACAGTACGTTGAGCGATAGAGgtaagttgaa ... taatctgcagAATTGACATTGGATTATCGACTCGTTTTGGGCTCGCTGTGCAACAGGGAAG
EST: GAAAGGCTGATGATTAGAGAGTACTTGGAACAGTACGTTGAGCGATAGAG AATTGACATTGGATTATCGACTCGTTTTGGGCTCGCTGTGCAACAGGGAAGEST: gi|87007869|gb|CI296847.1|CI296847
genomic: GAAAGGCTGATGATTAGAGAGTACTTGGAACAGTACGTTGAGCGATAGAGgtaagttgaa ... taatctgcagAATTGACATTGGATTATCGACTCGTTTTGGGCTCGCTGTGCAACAGGGAAG
EST: GAAAGGCTGATGATTAGAGAGTACTTGGAACAGTACGTTGAGCGATAGAG AATTGACATTGGATTATCGACTCGTTTTGGGCTCGCTGTGCAACAGGGAAGEST: gi|29626840|gb|CB631851.1|CB631851
genomic: GAAAGGCTGATGATTAGAGAGTACTTGGAACAGTACGTTGAGCGATAGAGgtaagttgaa ... taatctgcagAATTGACATTGGATTATCGACTCGTTTTGGGCTCGCTGTGCAACAGGGAAG
EST: GAAAGGCTGATGATTAGAGAGTACTTGGAACAGTACGTTGAGCGATAGAG AATTGACATTGGATTATCGACTCGTTTTGGGCTCGCTGTGCAACAGGGAAGEST: gi|88690033|gb|CI734112.1|CI734112
genomic: GAAAGGCTGATGATTAGAGAGTACTTGGAACAGTACGTTGAGCGATAGAGgtaagttgaa ... taatctgcagAATTGACATTGGATTATCGACTCGTTTTGGGCTCGCTGTGCAACAGGGAAG
EST: GAAAGGCTGATGATTAGAGAGTACTTGGAACAGTACGTTGAGCGATAGAG AATTGACATTGGATTATCGACTCGTTTTGGGCTCGCTGTGCAACAGGGAAGEST: gi|88689057|gb|CI732633.1|CI732633
genomic: GAAAGGCTGATGATTAGAGAGTACTTGGAACAGTACGTTGAGCGATAGAGgtaagttgaa ... taatctgcagAATTGACATTGGATTATCGACTCGTTTTGGGCTCGCTGTGCAACAGGGAAG
EST: GAAAGGCTGATGATTAGAGAGTACTTGGAACAGTACGTTGAGCGATAGAG AATTGACATTGGATTATCGACTCGTTTTGGGCTCGCTGTGCAACAGGGAAGEST: gi|58696174|gb|CK084861.1|CK084861
genomic: GAAAGGCTGATGATTAGAGAGTACTTGGAACAGTACGTTGAGCGATAGAGgtaagttgaa ... taatctgcagAATTGACATTGGATTATCGACTCGTTTTGGGCTCGCTGTGCAACAGGGAAG
EST: GAAAGGCTGATGATTAGAGAGTACTTGGAACAGTACGTTGAGCGATAGAG AATTGA-ATTGGATTATCGACTCGTTTTGGGCTCGCTGTGCAACAGGGAAGEST: gi|58694687|gb|CK083374.1|CK083374
genomic: GAAAGGCTGATGATTAGAGAGTACTTGGAACAGTACGTTGAGCGATAGAGgtaagttgaa ... taatctgcagAATTGACATTGGATTATCGACTCGTTTTGGGCTCGCTGTGCAACAGGGAAG
EST: GAAAGGCTGATGATTAGAGAGTACTTGGAACAGTACGTTGAGCGATAGAG AATTGA-ATTGGATTATCGACTCGTTTTGGGCTCGCTGTGCAACAGGGAAGEST: gi|88963923|gb|CI031256.1|CI031256
genomic: GAAAGGCTGATGATTAGAGAGTACTTGGAACAGTACGTTGAGCGATAGAGgtaagttgaa ... taatctgcagAATTGACATTGGATTATCGACTCGTTTTGGGCTCGCTGTGCAACAGGGAAG
EST: GAAAGGCTGATGATTAGAGAGTACTTGGAACAGTACGTTGAGCGATAGAG AATTGACATTGGATTATCGACTCGTTTTGGGCTCGCTGTGCAACAGGGAAGEST: gi|27549021|gb|CA767031.2|CA767031
genomic: GAAAGGCTGATGATTAGAGAGTACTTGGAACAGTACGTTGAGCGATAGAGgtaagttgaa ... taatctgcagAATTGACATTGGATTATCGACTCGTTTTGGGCTCGCTGTGCAACAGGGAAG
EST: GAAAGGCTGATGATTAGAGAGTACTTGGAACAGTACGTTGAGCGATAGAG AATTGACATTGGATTATCGACTCGTTTTGGGCTCGCTGTGCAACAGGGAAGEST: gi|88688572|gb|CI732148.1|CI732148
genomic: GAAAGGCTGATGATTAGAGAGTACTTGGAACAGTACGTTGAGCGATAGAGgtaagttgaa ... taatctgcagAATTGACATTGGATTATCGACTCGTTTTGGGCTCGCTGTGCAACAGGGAAG
EST: GAAAGGCTGATGATTAGAGAGTACTTGGAACAGTACGTTGAGCGATAGAG AATTGACATTGGATTATCGACTCGTTTTGGGCTCGCTGTGCAACAGGGAAGEST: gi|29656147|gb|CB652422.1|CB652422
genomic: GAAAGGCTGATGATTAGAGAGTACTTGGAACAGTACGTTGAGCGATAGAGgtaagttgaa ... taatctgcagAATTGACATTGGATTATCGACTCGTTTTGGGCTCGCTGTGCAACAGGGAAG
EST: GAAAGGCTGATGATTAGAGAGTACTTGGAACAGTACGTTGAGCGATAGAG AATTGACATTGGATTATCGACTCGTTTTGGGCTCGCTGTGCAACAGGGAAGEST: gi|88689587|gb|CI733163.1|CI733163
genomic: GAAAGGCTGATGATTAGAGAGTACTTGGAACAGTACGTTGAGCGATAGAGgtaagttgaa ... taatctgcagAATTGACATTGGATTATCGACTCGTTTTGGGCTCGCTGTGCAACAGGGAAG
EST: GAAAGGCTGATGATTAGAGAGTACTTGGAACAGTACGTTGAGCGATAGAG AATTGACATTGGATTATCGACTCGTTTTGGGCTCGCTGTGCAACAGGGAAG
genomic: GAAAGGCTGATGATTAGAGAGTACTTGGAACAGTACGTTGAGCGATAGAGgtaagttgaa ... taatctgcagAATTGACATTGGATTATCGACTCGTTTTGGGCTCGCTGTGCAACAGGGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGAATTAAGGGAGCGTTTGACTGGTCAAAATCCCGATCTTACGAAGGAGGAAAGGCTGATGATTAGAGAGTACTTGGAACAGTACGTTGAGCGATAGAGgtaagttgaaatttattcagactactagtattgtgttgcaggggttttgctgattatgcttatgcatgaacatatcattcggattggactgcactaatctgcag
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