1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
TGGTTGGTCCAAATGGTATTGGCAAATCCACTATACTTAAACTAATATCTGGAGATCTTCAGCCAACTTCAGGGACAGTGTTCCGCTCTCCCAAGgttcttttatccttctgaagctacagtcatgacatttcactacttagcattaccgatattacattaattctgattggcatgattgcatagtttctacatg...
species | Oryza sativa |
transcript | LOC_Os02g58020.1 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: TATCTGGAGATCTTCAGCCAACTTCAGGGACAGTGTTCCGCTCTCCCAAG GTTCGCATGGCTGTATTCAATCAACACCATGTTGATGGGCTTGATTTAACAEST: gi|27576082|gb|CA998776.1|CA998776
genomic: TATCTGGAGATCTTCAGCCAACTTCAGGGACAGTGTTCCGCTCTCCCAAGgttcttttat ... ttatttgcagGTTCGCATGGCTGTATTCAATCAACACCATGTTGATGGGCTTGATTTAACA
EST: TATCTGGAGATCTTCAGCCAACTTCAGGGACAGTGTTCCGCTCTCCCAAG GTTCGCATGGCTGTATTCAATCAACACCATGTTGATGGGCTTGATTTAACAEST: gi|22304794|gb|BQ906016.1|BQ906016
genomic: TATCTGGAGATCTTCAGCCAACTTCAGGGACAGTGTTCCGCTCTCCCAAGgttcttttat ... ttatttgcagGTTCGCATGGCTGTATTCAATCAACACCATGTTGATGGGCTTGATTTAACA
EST: CGCTCTCCCAAG TTTCGCATGGCTGTATTCAATCAACACCATGTTGATGGGCTTGATTTAACAEST: gi|29623431|gb|CB628442.1|CB628442
genomic: CGCTCTCCCAAGgttcttttat ... ttatttgcagGTTCGCATGGCTGTATTCAATCAACACCATGTTGATGGGCTTGATTTAACA
EST: TATCTGGAGATCTTCAGCCAACTTCAGGGACAGTGTTCCGCTCTCCCAAG GTTCGCATGGCTGTATTCAATCAACACCATGTTGATGGGCTTGATTTAACAEST: gi|3766930|gb|AU031040.1|AU031040
genomic: TATCTGGAGATCTTCAGCCAACTTCAGGGACAGTGTTCCGCTCTCCCAAGgttcttttat ... ttatttgcagGTTCGCATGGCTGTATTCAATCAACACCATGTTGATGGGCTTGATTTAACA
EST: TATCTGGAGATCTTCAGCCAACTTCAGGGACAGTGTTCCGCTCTCCCAAG GTTCGCATGGCTGTATTCAATCAACACCATGTTGATGGGCTTGATTTAACAEST: gi|29676044|gb|CB672319.1|CB672319
genomic: TATCTGGAGATCTTCAGCCAACTTCAGGGACAGTGTTCCGCTCTCCCAAGgttcttttat ... ttatttgcagGTTCGCATGGCTGTATTCAATCAACACCATGTTGATGGGCTTGATTTAACA
EST: TATCTGGAGATCTTCAGCCAACTTCAGGGACAGTGTTCCGCTCTCCCAAG GTTCGCATGGCTGTATTCAATCAACACCATGTTGATGGGCTTGATTTAACAEST: gi|27546087|gb|CA764161.2|CA764161
genomic: TATCTGGAGATCTTCAGCCAACTTCAGGGACAGTGTTCCGCTCTCCCAAGgttcttttat ... ttatttgcagGTTCGCATGGCTGTATTCAATCAACACCATGTTGATGGGCTTGATTTAACA
EST: TATCTGGAGATCTTCAGCCAACCTCAGGGACAGTGTTCCGCTCTCCCAAG GTTCGCATGGCTGTATTCAATCAACACCATGTTGATGGGCTTGATTTAACAEST: gi|29676045|gb|CB672320.1|CB672320
genomic: TATCTGGAGATCTTCAGCCAACTTCAGGGACAGTGTTCCGCTCTCCCAAGgttcttttat ... ttatttgcagGTTCGCATGGCTGTATTCAATCAACACCATGTTGATGGGCTTGATTTAACA
EST: TATCTGGAGATCTTCAGCCAACTTCAGGGACAGTGTTCCGCTCTCCCAAG GTTCGCATGGCTGTATTCAATCAACACCATGTTGATGGGCTTGATTTAACAEST: gi|218495876|gb|FG947058.1|FG947058
genomic: TATCTGGAGATCTTCAGCCAACTTCAGGGACAGTGTTCCGCTCTCCCAAGgttcttttat ... ttatttgcagGTTCGCATGGCTGTATTCAATCAACACCATGTTGATGGGCTTGATTTAACA
EST: TATCTGGAGATCTTCAGCCAACTTCAGGGACAGTGTTCCGCTCTCCCAAG GTTCGCATGGCTGTATTCAATCAACACCATGTTGATGGGCTTGATTTAACAEST: gi|29664090|gb|CB660365.1|CB660365
genomic: TATCTGGAGATCTTCAGCCAACTTCAGGGACAGTGTTCCGCTCTCCCAAGgttcttttat ... ttatttgcagGTTCGCATGGCTGTATTCAATCAACACCATGTTGATGGGCTTGATTTAACA
EST: TATCTGGAGATCTTCAGCCAACTTCAGGGACAGTGTTCCGCTCTCCCAAG GTTCGCATGGCTGTATTCAATCAACACCATGTTGATGGGCTTGATTTAACAEST: gi|29662748|gb|CB659023.1|CB659023
genomic: TATCTGGAGATCTTCAGCCAACTTCAGGGACAGTGTTCCGCTCTCCCAAGgttcttttat ... ttatttgcagGTTCGCATGGCTGTATTCAATCAACACCATGTTGATGGGCTTGATTTAACA
EST: TATCTGGAGATCTTCAGCCAACTTCAGGGACAGTGTTCCGCTCTCCCAAG GTTCGCATGGCTGTATTCAATCAACACCATGTTGATGGGCTTGATTTAACAEST: gi|58695639|gb|CK084326.1|CK084326
genomic: TATCTGGAGATCTTCAGCCAACTTCAGGGACAGTGTTCCGCTCTCCCAAGgttcttttat ... ttatttgcagGTTCGCATGGCTGTATTCAATCAACACCATGTTGATGGGCTTGATTTAACA
EST: TATCTGGAGATCTTCAGCCTACTTCAGGGACAGTGTTCCGCTCTCCCAAG GTTCGCATGGCTGTATTCAATCAACACCATGTTGATGGGCTTGATTTAACAEST: gi|87016527|gb|CI273737.1|CI273737
genomic: TATCTGGAGATCTTCAGCCAACTTCAGGGACAGTGTTCCGCTCTCCCAAGgttcttttat ... ttatttgcagGTTCGCATGGCTGTATTCAATCAACACCATGTTGATGGGCTTGATTTAACA
EST: ATCTGGAGATCTTCAGCCAACTTCAGGGACAGTGTTCCGCTCTCCCAAG GTTCGCATGGCTGTATTCAATCAACACCATGTTGATGGGCTTGATTTAACAEST: gi|29644367|gb|CB649374.1|CB649374
genomic: ATCTGGAGATCTTCAGCCAACTTCAGGGACAGTGTTCCGCTCTCCCAAGgttcttttat ... ttatttgcagGTTCGCATGGCTGTATTCAATCAACACCATGTTGATGGGCTTGATTTAACA
EST: TATCTGGAGATCTTCAGCCAACTTCAGGGACAGTGTTCCGCTCTCCCAAG GTTCGCATGGCTGTATTCAATCAACACCATGTTGATGGGCTTGATTTAACA
genomic: TATCTGGAGATCTTCAGCCAACTTCAGGGACAGTGTTCCGCTCTCCCAAGgttcttttat ... ttatttgcagGTTCGCATGGCTGTATTCAATCAACACCATGTTGATGGGCTTGATTTAACA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGTTGGTCCAAATGGTATTGGCAAATCCACTATACTTAAACTAATATCTGGAGATCTTCAGCCAACTTCAGGGACAGTGTTCCGCTCTCCCAAGgttcttttatccttctgaagctacagtcatgacatttcactacttagcattaccgatattacattaattctgattggcatgattgcatagtttctacatg
- - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - GAGATC