1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
GTCTTATGATCACGTATGTTGCCTTGAACCTTATGGATGGTCATGGTCAACCAGCTCTTCTTTACATTGTGCCTTTTACGCTTGgtaagtaaagccttccttgtgcctggtgagaaggttcatagcttcaggggtttagtgctctcattttaacacggcaccatgctactgcag
species | Oryza sativa |
transcript | LOC_Os02g57710.1 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: GGATGGTCATGGTCAACCAGCTCTTCTTTACATTGTGCCTTTTACGCTTG GCACCTTCATAGCGCTCGGCAGGAAACGGGGTGAACTCAGGAACCTCTGGAEST: gi|58653658|gb|CK042338.1|CK042338
genomic: GGATGGTCATGGTCAACCAGCTCTTCTTTACATTGTGCCTTTTACGCTTGgtaagtaaag ... gctactgcagGCACCTTCATAGCGCTCGGCAGGAAACGGGGTGAACTCAGGAACCTCTGGA
EST: GGATGGTCATGGTCAACCAGCTCTTCTTTACATTGTGCCTTTTACGCTTG GCACCTTCATAGCGCTCGGCAGGAAACGGGGTGAACTCAGGAACCTCTGGAEST: gi|29623067|gb|CB628078.1|CB628078
genomic: GGATGGTCATGGTCAACCAGCTCTTCTTTACATTGTGCCTTTTACGCTTGgtaagtaaag ... gctactgcagGCACCTTCATAGCGCTCGGCAGGAAACGGGGTGAACTCAGGAACCTCTGGA
EST: GGATGGTCATGGTCAACCAGCTCTTCTTTACATTGTGCCTTTTACGCTTG GCACCTTCATAGCGCTCGGCAGGAAACGGGGTGAACTCAGGAACCTCTGGAEST: gi|29632359|gb|CB637368.1|CB637368
genomic: GGATGGTCATGGTCAACCAGCTCTTCTTTACATTGTGCCTTTTACGCTTGgtaagtaaag ... gctactgcagGCACCTTCATAGCGCTCGGCAGGAAACGGGGTGAACTCAGGAACCTCTGGA
EST: GGATGGTCATGGTCAACCAGCTCTTCTTTACATTGTGCCTTTTACGCTTG GCACCTTCATAGCGCTCGGCAGGAAACGGGGTGAACTCAGGAACCTCTGGAEST: gi|29639825|gb|CB644834.1|CB644834
genomic: GGATGGTCATGGTCAACCAGCTCTTCTTTACATTGTGCCTTTTACGCTTGgtaagtaaag ... gctactgcagGCACCTTCATAGCGCTCGGCAGGAAACGGGGTGAACTCAGGAACCTCTGGA
EST: GGATGGTCATGGTCAACCAGCTCTTCTTTACATTGTGCCTTTTACGCTTG GCACCTTCATAGCGCTCGGCAGGAAACGGGGTGAACTCAGGAACCTCTGGAEST: gi|29631554|gb|CB636563.1|CB636563
genomic: GGATGGTCATGGTCAACCAGCTCTTCTTTACATTGTGCCTTTTACGCTTGgtaagtaaag ... gctactgcagGCACCTTCATAGCGCTCGGCAGGAAACGGGGTGAACTCAGGAACCTCTGGA
EST: GGATGGTCATGGTCAACCAGCTCTTCTTTACATTGTGCCTTTTACGCTTG GCACCTTCATAGCGCTCGGCAGGAAACGGGGTGAACTCAGGAACCTCTGGAEST: gi|58658945|gb|CK047625.1|CK047625
genomic: GGATGGTCATGGTCAACCAGCTCTTCTTTACATTGTGCCTTTTACGCTTGgtaagtaaag ... gctactgcagGCACCTTCATAGCGCTCGGCAGGAAACGGGGTGAACTCAGGAACCTCTGGA
EST: GGATGGTCATGGTCAACCAGCTCTTCTTTACATTGTGCCTTTTACGCTTG GCACCTTCATAGCGCTCGGCAGGAAACGGGGTGAACTCAGGAACCTCTGGAEST: gi|29676694|gb|CB672969.1|CB672969
genomic: GGATGGTCATGGTCAACCAGCTCTTCTTTACATTGTGCCTTTTACGCTTGgtaagtaaag ... gctactgcagGCACCTTCATAGCGCTCGGCAGGAAACGGGGTGAACTCAGGAACCTCTGGA
EST: GGATGGTCATGGTCAACCAGCTCTTCTTTACATTGTGCCTTTTACGCTTG GCACCTTCATAGCGCTCGGCAGGAAACGGGGTGAACTCAGGAACCTCTGGAEST: gi|29677467|gb|CB673742.1|CB673742
genomic: GGATGGTCATGGTCAACCAGCTCTTCTTTACATTGTGCCTTTTACGCTTGgtaagtaaag ... gctactgcagGCACCTTCATAGCGCTCGGCAGGAAACGGGGTGAACTCAGGAACCTCTGGA
EST: GGATGGTCATGGTCAACCAGCTCTTCTTTACATTGTGCCTTTTACGCTTG GCACCTTCATAGCGCTCGGCAGGAAACGGGGTGAACTCAGGAACCTCTGGAEST: gi|89188671|gb|CI115920.1|CI115920
genomic: GGATGGTCATGGTCAACCAGCTCTTCTTTACATTGTGCCTTTTACGCTTGgtaagtaaag ... gctactgcagGCACCTTCATAGCGCTCGGCAGGAAACGGGGTGAACTCAGGAACCTCTGGA
EST: GGATGGTCATGGTCAACCAGCTCTTCTTTACATTGTGCCTTTTACGCTTG GCACCTTCATAGCGCTCGGCAGGAAACGGGGTGAACTCAGGAACCTCTGGAEST: gi|86833256|gb|CI334851.1|CI334851
genomic: GGATGGTCATGGTCAACCAGCTCTTCTTTACATTGTGCCTTTTACGCTTGgtaagtaaag ... gctactgcagGCACCTTCATAGCGCTCGGCAGGAAACGGGGTGAACTCAGGAACCTCTGGA
EST: TTTTACGCTTG GCACCTTCATAGCGCTCGGCAGGAAACGGGGTGAACTCATGAACCTCTGGAEST: gi|58679622|gb|CK068309.1|CK068309
genomic: TTTTACGCTTGgtaagtaaag ... gctactgcagGCACCTTCATAGCGCTCGGCAGGAAACGGGGTGAACTCAGGAACCTCTGGA
EST: GGATGGTCATGGTCAACCAGCTCTTCTTTACATTGTGCCTTTTACGCTTG GCACCTTCATAGCGCTCGGCAGGAAACGGGGTGAACTCAGGAACCTCTGGAEST: gi|29628485|gb|CB633496.1|CB633496
genomic: GGATGGTCATGGTCAACCAGCTCTTCTTTACATTGTGCCTTTTACGCTTGgtaagtaaag ... gctactgcagGCACCTTCATAGCGCTCGGCAGGAAACGGGGTGAACTCAGGAACCTCTGGA
EST: GGATGGTCATGGTCAACCAGCTCTTCTTTACATTGTGCCTTTTACGCTTG GCACCTTCATAGCGCTCGGCAGGAAACGGGGTGAACTCAGGAACCTCTGGAEST: gi|88273413|gb|CI393819.1|CI393819
genomic: GGATGGTCATGGTCAACCAGCTCTTCTTTACATTGTGCCTTTTACGCTTGgtaagtaaag ... gctactgcagGCACCTTCATAGCGCTCGGCAGGAAACGGGGTGAACTCAGGAACCTCTGGA
EST: GATGGTCATGGTCAACCAGCTCTTCTTTACATTGTCCCTTTTACGCTTG GCACCTTCATAGCGCTCGGCAGGAAACGGGGTGAACTCAGGAACCTCTGGAEST: gi|58659339|gb|CK048019.1|CK048019
genomic: GATGGTCATGGTCAACCAGCTCTTCTTTACATTGTGCCTTTTACGCTTGgtaagtaaag ... gctactgcagGCACCTTCATAGCGCTCGGCAGGAAACGGGGTGAACTCAGGAACCTCTGGA
EST: GGATGGTCATGGTCAACCAGCTCTTCTTTACATTGTGCCTTTTACGCTTG GCACCTTCATAGCGCTCGGCAGGAAACGGGGTGAACTCAGGAACCTCTGGAEST: gi|33798918|gb|CF325316.1|CF325316
genomic: GGATGGTCATGGTCAACCAGCTCTTCTTTACATTGTGCCTTTTACGCTTGgtaagtaaag ... gctactgcagGCACCTTCATAGCGCTCGGCAGGAAACGGGGTGAACTCAGGAACCTCTGGA
EST: GGATGGTCATGGTCAACCAGCTCTTCTTTACATTGTGCCTTTTACGCTTG GCACCTTCATAGCGCTCGGCAGGAAACGGGGTGAACTCAGGAACCTCTGGAEST: gi|18386669|gb|BM419867.1|BM419867
genomic: GGATGGTCATGGTCAACCAGCTCTTCTTTACATTGTGCCTTTTACGCTTGgtaagtaaag ... gctactgcagGCACCTTCATAGCGCTCGGCAGGAAACGGGGTGAACTCAGGAACCTCTGGA
EST: GGATGGTCATGGTCAACCAGCTCTTCTTTACATTGTGCCTTTTACGCTTG GCACCTTCATAGCGCTCGGCAGGAAACGGGGTGAACTCAGGAACCTCTGGAEST: gi|88967262|gb|CI002456.1|CI002456
genomic: GGATGGTCATGGTCAACCAGCTCTTCTTTACATTGTGCCTTTTACGCTTGgtaagtaaag ... gctactgcagGCACCTTCATAGCGCTCGGCAGGAAACGGGGTGAACTCAGGAACCTCTGGA
EST: GGATGGTCATGGTCAACCAGCTCTTCTTTACATTGTGCCTTTTACGCTTG GCACCTTCATAGCGCTCGGCAGGAAACGGGGTGAACTCAGGAACCTCTGGA
genomic: GGATGGTCATGGTCAACCAGCTCTTCTTTACATTGTGCCTTTTACGCTTGgtaagtaaag ... gctactgcagGCACCTTCATAGCGCTCGGCAGGAAACGGGGTGAACTCAGGAACCTCTGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCTTATGATCACGTATGTTGCCTTGAACCTTATGGATGGTCATGGTCAACCAGCTCTTCTTTACATTGTGCCTTTTACGCTTGgtaagtaaagccttccttgtgcctggtgagaaggttcatagcttcaggggtttagtgctctcattttaacacggcaccatgctactgcag
- - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC