1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' |
AAGGCACGCTATCAAGAGGCCATGAATATACTGAAACCACAGGGCGGGGAGCTTGACCTGCTGATTGCAATATTGCCTGACAATAATGGTTCTCTTTATGgtatgcctttttatttcaaaacaacacttgattgttatctgataaaaaagtctttattaatatgcttgtcaatcctcag
species | Oryza sativa |
transcript | LOC_Os02g45070.2 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: GCTTGACCTGCTGATTGCAATATTGCCTGACAATAATGGTTCTCTTTATG GCGATCTCAAAAGGATATGTGAGACTGATCTTGGATTGGTCTCGCAATGCTEST: gi|58666415|gb|CK055101.1|CK055101
genomic: GCTTGACCTGCTGATTGCAATATTGCCTGACAATAATGGTTCTCTTTATGgtatgccttt ... caatcctcagGCGATCTCAAAAGGATATGTGAGACTGATCTTGGATTGGTCTCGCAATGCT
EST: GCTTGACCTGCTGATTGCAATATTGCCTGACAATAATGGTTCTCTTTATG GCGATCTCAAAAGGATATGTGAGACTGATCTTGGATTGGTCTCGCAATGCTEST: gi|33801495|gb|CF326620.1|CF326620
genomic: GCTTGACCTGCTGATTGCAATATTGCCTGACAATAATGGTTCTCTTTATGgtatgccttt ... caatcctcagGCGATCTCAAAAGGATATGTGAGACTGATCTTGGATTGGTCTCGCAATGCT
EST: GCTTGACCTGCTGATTGCAATATTGCCTGACAATAATGGTTCTCTTTATG GCGATCTCAAAAGGATATGTGAGACTGATCTTGGATTGGTCTCGCAATGCTEST: gi|58661798|gb|CK050478.1|CK050478
genomic: GCTTGACCTGCTGATTGCAATATTGCCTGACAATAATGGTTCTCTTTATGgtatgccttt ... caatcctcagGCGATCTCAAAAGGATATGTGAGACTGATCTTGGATTGGTCTCGCAATGCT
EST: GCTTGACCTGCTGATTGCAATATTGCCTGACAATAATGGTTCTCTTTATG GCGATCTCAAAAGGATATGTGAGACTGATEST: gi|58674483|gb|CK063170.1|CK063170
genomic: GCTTGACCTGCTGATTGCAATATTGCCTGACAATAATGGTTCTCTTTATGgtatgccttt ... caatcctcagGCGATCTCAAAAGGATATGTGAGACTGAT
EST: TGCCTGACAATAATGGTTCTCTTTATG GCGATCTCAAAAGGATATGTGAGACTGATCTTGGA-TGGTCTCGCAATGCTEST: gi|58664170|gb|CK052856.1|CK052856
genomic: TGCCTGACAATAATGGTTCTCTTTATGgtatgccttt ... caatcctcagGCGATCTCAAAAGGATATGTGAGACTGATCTTGGATTGGTCTCGCAATGCT
EST: GCTTGACCTGCTGATTGCAATATTGCCTGACAATAATGGTTCTCTTTATG GCGATCTCAAAAGGATATGTGAGACTGATCTTGGATTGGTCTCGCAATGCTEST: gi|58653440|gb|CK042120.1|CK042120
genomic: GCTTGACCTGCTGATTGCAATATTGCCTGACAATAATGGTTCTCTTTATGgtatgccttt ... caatcctcagGCGATCTCAAAAGGATATGTGAGACTGATCTTGGATTGGTCTCGCAATGCT
EST: GCTTGACCTGCTGATTGCAATATTGCCTGACAATAATGGTTCTCTTTATG GCGATCTCAAAAGGATATGTGAGACTGATCTTGGATTGGTCTCGCAATGCT
genomic: GCTTGACCTGCTGATTGCAATATTGCCTGACAATAATGGTTCTCTTTATGgtatgccttt ... caatcctcagGCGATCTCAAAAGGATATGTGAGACTGATCTTGGATTGGTCTCGCAATGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGGCACGCTATCAAGAGGCCATGAATATACTGAAACCACAGGGCGGGGAGCTTGACCTGCTGATTGCAATATTGCCTGACAATAATGGTTCTCTTTATGgtatgcctttttatttcaaaacaacacttgattgttatctgataaaaaagtctttattaatatgcttgtcaatcctcag
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