1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
GGGAGAACTGTATGACATGAATCTGAAGGGTCGTCCCCTTGCGTATACTCCATTCTGCGATAACAACAAGGAGATGGATGGCTATCGATTTTGGAAGCAAgtaagttaccaaattgttgttggttacataataaatgttttttggtcaagttgtttgctaactcccttttgctttccctctgtgaaag
species | Oryza sativa |
transcript | LOC_Os02g44510.1 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: CATTCTGCGATAACAACAAGGAGATGGATGGCTATCGATTTTGGAAGCAA GGTTTCTGGAAAGATCATCTGCGAGGAAGACCATACCACATCAGEST: gi|58658861|gb|CK047541.1|CK047541
genomic: CATTCTGCGATAACAACAAGGAGATGGATGGCTATCGATTTTGGAAGCAAgtaagttacc ... tctgtgaaagGGTTTCTGGAAAGATCATCTGCGAGGAAGACCATACCACATCAG
EST: CATTCTGCGATAACAACAAGGAGATGGATGGCTATCGATTTTGGAAGCAA GGTTTCTGGAAAGATCATCTGCGAGGAAGACCATACCACATCAGEST: gi|58609426|gb|CK037459.1|CK037459
genomic: CATTCTGCGATAACAACAAGGAGATGGATGGCTATCGATTTTGGAAGCAAgtaagttacc ... tctgtgaaagGGTTTCTGGAAAGATCATCTGCGAGGAAGACCATACCACATCAG
EST: CATTCTGCGATAACAACAAGGAGATGGATGGCTATCGATTTTGGAAGCAA GGTTTCTGGAAAGATCATCTGCGAGGAAGACCATACCACATCAGEST: gi|88401279|gb|CI685275.1|CI685275
genomic: CATTCTGCGATAACAACAAGGAGATGGATGGCTATCGATTTTGGAAGCAAgtaagttacc ... tctgtgaaagGGTTTCTGGAAAGATCATCTGCGAGGAAGACCATACCACATCAG
EST: CATTCTGCGATAACAACAAGGAGATGGATGGCTATCGATTTTGGAAGCAA GGTTTCTGGAAAGATCATCTGCGAGGAAGACCATACCACATCAGEST: gi|58594812|gb|CF993120.1|CF993120
genomic: CATTCTGCGATAACAACAAGGAGATGGATGGCTATCGATTTTGGAAGCAAgtaagttacc ... tctgtgaaagGGTTTCTGGAAAGATCATCTGCGAGGAAGACCATACCACATCAG
EST: ATTCTGCGATAGACGACAAGGAGATGGATGGCTATCGATTTTGGAAGCAA GGTTTCTGGAAAGATCATCTGCGAGGAAGACCATACCACATCAGEST: gi|58678387|gb|CK067074.1|CK067074
genomic: ATTCTGCGATA-ACAACAAGGAGATGGATGGCTATCGATTTTGGAAGCAAgtaagttacc ... tctgtgaaagGGTTTCTGGAAAGATCATCTGCGAGGAAGACCATACCACATCAG
EST: CATTCTGCGATAACAACAAGGAGATGGATGGCTATCGATTTTGGAAGCAA GGTTTCTGGAAAGATCATCTGCGAGGAAGACCATACCACATCAGEST: gi|218480649|gb|FG956875.1|FG956875
genomic: CATTCTGCGATAACAACAAGGAGATGGATGGCTATCGATTTTGGAAGCAAgtaagttacc ... tctgtgaaagGGTTTCTGGAAAGATCATCTGCGAGGAAGACCATACCACATCAG
EST: CATTCTGCGATAACAACAAGGAGATGGATGGCTATCGATTTTGGAAGCAA GGTTTCTGGAAAGATCATCTGCGAGGAAGACCATACCACATCAGEST: gi|58692422|gb|CK081109.1|CK081109
genomic: CATTCTGCGATAACAACAAGGAGATGGATGGCTATCGATTTTGGAAGCAAgtaagttacc ... tctgtgaaagGGTTTCTGGAAAGATCATCTGCGAGGAAGACCATACCACATCAG
EST: CATTCTGCGATAACAACAAGGAGATGGATGGCTATCGATTTTGGAAGCAA GGTTTCTGGAAAGATCATCTGCGAGGAAGACCATACCACATCAGEST: gi|88321783|gb|CI672927.1|CI672927
genomic: CATTCTGCGATAACAACAAGGAGATGGATGGCTATCGATTTTGGAAGCAAgtaagttacc ... tctgtgaaagGGTTTCTGGAAAGATCATCTGCGAGGAAGACCATACCACATCAG
EST: CATTCTGCGATAACAACAAGGAGATGGATGGCTATCGATTTTGGAAGCAA GGTTTCTGGAAAGATCATCTGCGAGGAAGACCATACCACATCAGEST: gi|58687397|gb|CK076084.1|CK076084
genomic: CATTCTGCGATAACAACAAGGAGATGGATGGCTATCGATTTTGGAAGCAAgtaagttacc ... tctgtgaaagGGTTTCTGGAAAGATCATCTGCGAGGAAGACCATACCACATCAG
EST: CATTCTGCGATAACAACAAGGAGATGGATGGCTATCGATTTTGGAAGCAA GGTTTCTGGAAAGATCATCTGCGAGGAAGACCATACCACATCAGEST: gi|428777|gb|D24933.1|D24933
genomic: CATTCTGCGATAACAACAAGGAGATGGATGGCTATCGATTTTGGAAGCAAgtaagttacc ... tctgtgaaagGGTTTCTGGAAAGATCATCTGCGAGGAAGACCATACCACATCAG
EST: CATTCTGCGATAACAACAAGGAGATGGATGGCTATCGATTTTGGAAGCAA GGTTTCTGGAAAGATCATCTGCGAGGAAGACCATACCACATCAGEST: gi|58658473|gb|CK047153.1|CK047153
genomic: CATTCTGCGATAACAACAAGGAGATGGATGGCTATCGATTTTGGAAGCAAgtaagttacc ... tctgtgaaagGGTTTCTGGAAAGATCATCTGCGAGGAAGACCATACCACATCAG
EST: CATTCTGCGATAACAACAAGGAGATGGATGGCTATCGATTTTGGAAGCAA GGTTTCTGGAAAGATCATCTGCGAGGAAGACCATACCACATCAGEST: gi|88371879|gb|CI681390.1|CI681390
genomic: CATTCTGCGATAACAACAAGGAGATGGATGGCTATCGATTTTGGAAGCAAgtaagttacc ... tctgtgaaagGGTTTCTGGAAAGATCATCTGCGAGGAAGACCATACCACATCAG
EST: CATTCTGCGATAACAACAAGGAGATGGATGGCTATCGATTTTGGAAGCAA GGTTTCTGGAAAGATCATCTGCGAGGAAGACCATACCACATCAG
genomic: CATTCTGCGATAACAACAAGGAGATGGATGGCTATCGATTTTGGAAGCAAgtaagttacc ... tctgtgaaagGGTTTCTGGAAAGATCATCTGCGAGGAAGACCATACCACATCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGGAGAACTGTATGACATGAATCTGAAGGGTCGTCCCCTTGCGTATACTCCATTCTGCGATAACAACAAGGAGATGGATGGCTATCGATTTTGGAAGCAAgtaagttaccaaattgttgttggttacataataaatgttttttggtcaagttgtttgctaactcccttttgctttccctctgtgaaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA