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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAAGAAGCAAGGAAGGAATGAATTCGTTATACGGTTGCAGCCATCGGAAGCCATGTATATGAAATTAACTgtatgtacaacttctgtaaacccatttatctgaagatatgtcagaattgtctattcatctttgcctgaagagaactccaaaaaaacaagtgttgtctgaacaaagtgcatgaactgttgcag

Basic information

species Oryza sativa
transcript LOC_Os02g38840.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g38840.2 (Oryza sativa), 5'ss of exon 13
lower sequence: GRMZM2G031107_T02 (Zea mays), 5'ss of exon 13
GCAAGAAGCAAGGAAGGAATGAATTCGTTATACGGTTGCAGCCATCGGAAGCCATGTATATGAAATTAACTgtatgtaca---acttctgtaaacccatttatctgaagatatgtcagaattgtctattcatctttgcctgaagagaactccaaaaaaacaagtgttgtctgaacaaagtgcatgaactgttgcag
||||||| ||||| |||||||| || || |||||  |||||||||| ||||||||||| |||||| |||| |||  ||||   || ||||||||| |     | ||||  |    | |  |||| ||             | ||||||    | |      ||  |||| ||   ||||   | ||||| ||||||
GCAAGAAACAAGGCAGGAATGAGTTTGTCATACGCCTGCAGCCATCAGAAGCCATGTACATGAAACTAACGgtacatacatttacctctgtaaactctagcctttgaattt---cccgctttgtttaaa-----------ggagagaaaaaaagatgcggcagaattgtatgtctaaaga--acgaacttttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88219092|gb|CI220365.1|CI220365
EST:     ATATGAAATTAACT                         GTCAAGAAACCCGGACTAGAAATGGCAACCGAACGAAGCGAGCTGGATCTG
genomic: ATATGAAATTAACTgtatgtacaa ... actgttgcagGTCAAGAAACCCGGACTAGAAATGGCAACCGAACAAAGCGAGCTGGATCTG
EST: gi|89176067|gb|CI043088.1|CI043088
EST:     AATTCGTTATACGGTTGCAGCCATCGGAAGCCATGTATATGAAATTAACT                         GTCAAGAAACCCGGACTAGAAATGGCAACCGAACAAAGCGAGCTGGATCTG
genomic: AATTCGTTATACGGTTGCAGCCATCGGAAGCCATGTATATGAAATTAACTgtatgtacaa ... actgttgcagGTCAAGAAACCCGGACTAGAAATGGCAACCGAACAAAGCGAGCTGGATCTG
EST: gi|89180521|gb|CI044800.1|CI044800
EST:     AATTCGTTATACGGTTGCAGCCATCGGAAGCCATGTATATGAAATTAACT                         GTCAAGAAACCCGGACTAGAAATGGCAACCGAACAAAGCGAGCTGGATCTG
genomic: AATTCGTTATACGGTTGCAGCCATCGGAAGCCATGTATATGAAATTAACTgtatgtacaa ... actgttgcagGTCAAGAAACCCGGACTAGAAATGGCAACCGAACAAAGCGAGCTGGATCTG
EST: gi|88262014|gb|CI365590.1|CI365590
EST:     CATGTATATGAAATTAACT                         GTCAAGAAACCCGGACTAGAAATGGCAACCGAACAAAGCGAGCTGGATCTG
genomic: CATGTATATGAAATTAACTgtatgtacaa ... actgttgcagGTCAAGAAACCCGGACTAGAAATGGCAACCGAACAAAGCGAGCTGGATCTG
EST: gi|89192387|gb|CI049848.1|CI049848
EST:     CCATCGGAAGCCATGTATATGAAATTAACT                         GTCAAGAAACCCGGACTAGAAATGGCAACCGAACAAAGCGAGCTGGATCTG
genomic: CCATCGGAAGCCATGTATATGAAATTAACTgtatgtacaa ... actgttgcagGTCAAGAAACCCGGACTAGAAATGGCAACCGAACAAAGCGAGCTGGATCTG
EST: gi|29616737|gb|CB621749.1|CB621749
EST:     AATTCGTTATACGGTTGCAGCCATCGGAAGCCATGTATATGAAATTAACT                         GTCAAGAAACCCGGACTAGAAATGGCAACCGAACAAAGCGAGCTGGATCTG
genomic: AATTCGTTATACGGTTGCAGCCATCGGAAGCCATGTATATGAAATTAACTgtatgtacaa ... actgttgcagGTCAAGAAACCCGGACTAGAAATGGCAACCGAACAAAGCGAGCTGGATCTG
EST: gi|88845594|gb|CI084519.1|CI084519
EST:     CAGCCATCGGAAGCCATGTATATGAAATTAACT                         GTCAAGAAACCCGGACTAGAAATGGCAACCGAACAAAGCGAGCTGGATCTG
genomic: CAGCCATCGGAAGCCATGTATATGAAATTAACTgtatgtacaa ... actgttgcagGTCAAGAAACCCGGACTAGAAATGGCAACCGAACAAAGCGAGCTGGATCTG
EST: gi|218492006|gb|FG967745.1|FG967745
EST:     AATTCGTTATACGGTTGCAGCCATCGGAAGCCATGTATATGAAATTAACT                         GTCAAGAAACCCGGACTAGAAATGGCAACCGAACAAAGCGAGCTGGATCTG
genomic: AATTCGTTATACGGTTGCAGCCATCGGAAGCCATGTATATGAAATTAACTgtatgtacaa ... actgttgcagGTCAAGAAACCCGGACTAGAAATGGCAACCGAACAAAGCGAGCTGGATCTG
EST: gi|89177186|gb|CI043689.1|CI043689
EST:     AATTCGTTATACGGTTGCAGCCATCGGAAGCCATGTATATGAAATTAACT                         GTCAAGAAACCCGGACTAGAAATGGCAACCGAACAAAGCGAGCTGGATCTG
genomic: AATTCGTTATACGGTTGCAGCCATCGGAAGCCATGTATATGAAATTAACTgtatgtacaa ... actgttgcagGTCAAGAAACCCGGACTAGAAATGGCAACCGAACAAAGCGAGCTGGATCTG
EST: gi|88242908|gb|CI240759.1|CI240759
EST:     TGAAATTAACT                         GTCAAGAAACCCGGACTAGAAATGGCAACCGAACAAAGCGAGCTGGATCTG
genomic: TGAAATTAACTgtatgtacaa ... actgttgcagGTCAAGAAACCCGGACTAGAAATGGCAACCGAACAAAGCGAGCTGGATCTG