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TGAGCCATCAAATGAGAAGTCTGATGTCTACAGCTTTGGTGTTATCCTATGGGAGCTCATGACATTGCAACAACCATGGAGTACTTTGAATCCAGCTCAGgtttgtatctcctgttttcttcatcacacggatattttccaacttcggacgaactgaattgaacaaagtctacctgttcacttgcag
species | Oryza sativa |
transcript | LOC_Os02g32610.4 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: GGGAGCTCATGACATTGCAACAACCATGGAGTACTTTGAATCCAGCTCAG GTTGTAGCAGCTGTTTGTTTTTAATGGGCGAAGGCTTGAAATTCCAAGTAGEST: gi|86833192|gb|CI334787.1|CI334787
genomic: GGGAGCTCATGACATTGCAACAACCATGGAGTACTTTGAATCCAGCTCAGgtttgtatct ... tcacttgcagGTTGTAGCAGCTG-TTGGTTTTAATGGGCGAAGGCTTGAAATTCCAAGTAG
EST: GGGAGCTCATGACATTGCAACAACCATTGAGTACTTT-AATCCACCTCAG GTTGTAGCAGCTGTTGGTTTTAATGGGCGAAGGCGTGAAATTCCAAGTAGCEST: gi|58689699|gb|CK078386.1|CK078386
genomic: GGGAGCTCATGACATTGCAACAACCATGGAGTACTTTGAATCCAGCTCAGgtttgtatct ... tcacttgcagGTTGTAGCAGCTGTTGGTTTTAATGGGCGAAGGCTTGAAATTCCAAGTAGC
EST: GGGAGCTCATGACATTGCAACAACCATGGAGTACTTTGAATCCAGCTCAG GTTGTAGCAGCTGTTGGTTTTAATGGGCGAAGGCTTGAAATTCCAAGTAGCEST: gi|29631490|gb|CB636499.1|CB636499
genomic: GGGAGCTCATGACATTGCAACAACCATGGAGTACTTTGAATCCAGCTCAGgtttgtatct ... tcacttgcagGTTGTAGCAGCTGTTGGTTTTAATGGGCGAAGGCTTGAAATTCCAAGTAGC
EST: TACTTTGAATCCAGCTCAG GTTGTAGCAGCTGTTGGTTTTAATGGGCGAAGGCTTGAAATTCCAAGTAGCEST: gi|29679116|gb|CB675391.1|CB675391
genomic: TACTTTGAATCCAGCTCAGgtttgtatct ... tcacttgcagGTTGTAGCAGCTGTTGGTTTTAATGGGCGAAGGCTTGAAATTCCAAGTAGC
EST: GGGAGCTCATGACATTGCAACAACCATGGAGTACTTTGAATCCAGCTCAG GTTGTAGCAGCTGTTGGTTTTAATGGGCGAAGGCTTGAAATTCCAAGTAGC
genomic: GGGAGCTCATGACATTGCAACAACCATGGAGTACTTTGAATCCAGCTCAGgtttgtatct ... tcacttgcagGTTGTAGCAGCTGTTGGTTTTAATGGGCGAAGGCTTGAAATTCCAAGTAGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGAGCCATCAAATGAGAAGTCTGATGTCTACAGCTTTGGTGTTATCCTATGGGAGCTCATGACATTGCAACAACCATGGAGTACTTTGAATCCAGCTCAGgtttgtatctcctgttttcttcatcacacggatattttccaacttcggacgaactgaattgaacaaagtctacctgttcacttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA