1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
ATCTGGGAGAATTATGTAGAGGGTGAAGAAGTTTCCAATGGATCTGCATCTGAATCCAAACAAAAGGAAATTCTCAAGgtttgttgatcaagaatatattggaatgtacagacttgccattttgtaaacaaactgttaacctggtttccatattcag
species | Oryza sativa |
transcript | LOC_Os02g32350.1 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: AAGTTTCCAATGGATCTGCATCTGAATCCAAACAAAAGGAAATTCTCAAG GTTGTTGTAACTGAAGTCCTTGGTGGTGGAAAGTTCTATGTCCAAACAGTTEST: gi|2311450|gb|C27605.1|C27605
genomic: AAGTTTCCAATGGATCTGCATCTGAATCCAAACAAAAGGAAATTCTCAAGgtttgttgat ... ccatattcagGTTGTTGTAACTGAAGTCCTTGGTGGTGGAAAGTTCTATGTCCAAACAGTT
EST: AAGTTTCCAATGGATCTGCATCTGAATCCAAACAAAAGGAAATTCTCAAG GTTGTTGTAACTGAAGTCCTTGGTGGTGGAAAGTTCTATGTCCAAACAGTTEST: gi|29622581|gb|CB627592.1|CB627592
genomic: AAGTTTCCAATGGATCTGCATCTGAATCCAAACAAAAGGAAATTCTCAAGgtttgttgat ... ccatattcagGTTGTTGTAACTGAAGTCCTTGGTGGTGGAAAGTTCTATGTCCAAACAGTT
EST: AAGTTTCCAATGGATCTGCATCTGAATCCAAACAAAAGGAAATTCTCAAG GTTGTTGTAACTGAAGTCCTTGGTGGTGGAAAGTTCTATGTCCAAACAGTTEST: gi|29674464|gb|CB670739.1|CB670739
genomic: AAGTTTCCAATGGATCTGCATCTGAATCCAAACAAAAGGAAATTCTCAAGgtttgttgat ... ccatattcagGTTGTTGTAACTGAAGTCCTTGGTGGTGGAAAGTTCTATGTCCAAACAGTT
EST: AAGTTTCCAATGGATCTGCATCTGAATCCAAACAAAAGGAAATTCTCAAG GTTGTTGTAACTGAAGTCCTTGGTGGTGGAAAGTTCTATGTCCAAACAGTTEST: gi|163928125|gb|EG712993.1|EG712993
genomic: AAGTTTCCAATGGATCTGCATCTGAATCCAAACAAAAGGAAATTCTCAAGgtttgttgat ... ccatattcagGTTGTTGTAACTGAAGTCCTTGGTGGTGGAAAGTTCTATGTCCAAACAGTT
EST: AAGTTTCCAATGGATCTGCATCTGAATCCAAACAAAAGGAAATTCTCAAG GTTGTTGTAACTGAAGTCCTTGGTGGTGGAAAGTTCTATGTCCAAACAGTTEST: gi|218498571|gb|FG951792.1|FG951792
genomic: AAGTTTCCAATGGATCTGCATCTGAATCCAAACAAAAGGAAATTCTCAAGgtttgttgat ... ccatattcagGTTGTTGTAACTGAAGTCCTTGGTGGTGGAAAGTTCTATGTCCAAACAGTT
EST: AAGTTTCCAATGGATCTGCATCTGAATCCAAACAAAAGGAAATTCTCAAG GTTGTTGTAACTGAAGTCCTTGGTGGTGGAAAGTTCTATGTCCAAACAGTTEST: gi|29623578|gb|CB628589.1|CB628589
genomic: AAGTTTCCAATGGATCTGCATCTGAATCCAAACAAAAGGAAATTCTCAAGgtttgttgat ... ccatattcagGTTGTTGTAACTGAAGTCCTTGGTGGTGGAAAGTTCTATGTCCAAACAGTT
EST: AAGTTTCCAATGGATCTGCATCTGAATCCAAACAAAAGGAAATTCTCAAG GTTGTTGTAACTGAAGTCCTTGGTGGTGGAAAGTTCTATGTCCAAACAGTTEST: gi|66916134|gb|CX102982.1|CX102982
genomic: AAGTTTCCAATGGATCTGCATCTGAATCCAAACAAAAGGAAATTCTCAAGgtttgttgat ... ccatattcagGTTGTTGTAACTGAAGTCCTTGGTGGTGGAAAGTTCTATGTCCAAACAGTT
EST: AAGTTTCCAATGGATCTGCATCTGAATCCAAACAAAAGGAAATTCTCAAG GTTGTTGTAACTGAAGTCCTTGGTGGTGGAAAGTTCTATGTCCAAACAGTTEST: gi|88329612|gb|CI650071.1|CI650071
genomic: AAGTTTCCAATGGATCTGCATCTGAATCCAAACAAAAGGAAATTCTCAAGgtttgttgat ... ccatattcagGTTGTTGTAACTGAAGTCCTTGGTGGTGGAAAGTTCTATGTCCAAACAGTT
EST: AAGTTTCCAATGGATCTGCATCTGAATCCAAACAAAAGGAAATTCTCAAG GTTGTTGTAACTGAAGTCCTTGGTGGTGGAAAGTTCTATGTCCAAACAGTTEST: gi|58684252|gb|CK072939.1|CK072939
genomic: AAGTTTCCAATGGATCTGCATCTGAATCCAAACAAAAGGAAATTCTCAAGgtttgttgat ... ccatattcagGTTGTTGTAACTGAAGTCCTTGGTGGTGGAAAGTTCTATGTCCAAACAGTT
EST: AAGTTTCCAATGGATCTGCATCTGAATCCAAACAAAAGGAAATTCTCAAG GTTGTTGTAACTGAAGTCCTTGGTGGTGGAAAGTTCTATGTCCAAACAGTTEST: gi|13420819|gb|AU174909.1|AU174909
genomic: AAGTTTCCAATGGATCTGCATCTGAATCCAAACAAAAGGAAATTCTCAAGgtttgttgat ... ccatattcagGTTGTTGTAACTGAAGTCCTTGGTGGTGGAAAGTTCTATGTCCAAACAGTT
EST: AAGTTTCCAATGGATCTGCATCTGAATCCAAACAAAAGGAAATTCTCAAG GTTGTTGTAACTGAAGTCCTTGGTGGTGGAAAGTTCTATGTCCAAACAGTTEST: gi|29627293|gb|CB632304.1|CB632304
genomic: AAGTTTCCAATGGATCTGCATCTGAATCCAAACAAAAGGAAATTCTCAAGgtttgttgat ... ccatattcagGTTGTTGTAACTGAAGTCCTTGGTGGTGGAAAGTTCTATGTCCAAACAGTT
EST: AAGTTTCCAATGGATCTGCATCTGAATCCAAACAAAAGGAAATTCTCAAG GTTGTTGTAACTGAAGTCCTTGGTGGTGGAAAGTTCTATGTCCAAACAGTTEST: gi|29631512|gb|CB636521.1|CB636521
genomic: AAGTTTCCAATGGATCTGCATCTGAATCCAAACAAAAGGAAATTCTCAAGgtttgttgat ... ccatattcagGTTGTTGTAACTGAAGTCCTTGGTGGTGGAAAGTTCTATGTCCAAACAGTT
EST: AAGTTTCCAATGGATCTGCATCTGAATCCAAACAAAAGGAAATTCTCAAG GTTGTTGTAACTGAAGTCCTTGGTGGTGGAAAGTTCTATGTCCAAACAGTTEST: gi|38565897|gb|CK085350.1|CK085350
genomic: AAGTTTCCAATGGATCTGCATCTGAATCCAAACAAAAGGAAATTCTCAAGgtttgttgat ... ccatattcagGTTGTTGTAACTGAAGTCCTTGGTGGTGGAAAGTTCTATGTCCAAACAGTT
EST: AAGTTTCCAATGGATCTGCATCTGAATCCAAACAAAAGGAAATTCTCAAG GTTGTTGTAACTGAAGTCCTTGGTGGTGGAAAGTTCTATGTCCAAACAGTTEST: gi|218500523|gb|FG958817.1|FG958817
genomic: AAGTTTCCAATGGATCTGCATCTGAATCCAAACAAAAGGAAATTCTCAAGgtttgttgat ... ccatattcagGTTGTTGTAACTGAAGTCCTTGGTGGTGGAAAGTTCTATGTCCAAACAGTT
EST: AAGTTTCCAATGGATCTGCATCTGAATCCAAACAAAAGGAAATTCTCAAG GTTGTTGTAACTGAAGTCCTTGGTGGTGGAAAGTTCTATGTCCAAACAGTTEST: gi|29644259|gb|CB649266.1|CB649266
genomic: AAGTTTCCAATGGATCTGCATCTGAATCCAAACAAAAGGAAATTCTCAAGgtttgttgat ... ccatattcagGTTGTTGTAACTGAAGTCCTTGGTGGTGGAAAGTTCTATGTCCAAACAGTT
EST: AAGTTTCCAATGGATCTGCATCTGAATCCAAACAAAAGGAAATTCTCAAG GTTGTTGTAACTGAAGTCCTTGGTGGTGGAAAGTTCTATGTCCAAACAGTTEST: gi|58692787|gb|CK081474.1|CK081474
genomic: AAGTTTCCAATGGATCTGCATCTGAATCCAAACAAAAGGAAATTCTCAAGgtttgttgat ... ccatattcagGTTGTTGTAACTGAAGTCCTTGGTGGTGGAAAGTTCTATGTCCAAACAGTT
EST: AAGTTTCCAATGGATCTGCATCTGAATCCAAACAAAAGGAAATTCTCAAG GTTGTTGTAACTGAAGTCCTTGGTGGTGGAAAGTTCTATGTCCAAACAGTT
genomic: AAGTTTCCAATGGATCTGCATCTGAATCCAAACAAAAGGAAATTCTCAAGgtttgttgat ... ccatattcagGTTGTTGTAACTGAAGTCCTTGGTGGTGGAAAGTTCTATGTCCAAACAGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCTGGGAGAATTATGTAGAGGGTGAAGAAGTTTCCAATGGATCTGCATCTGAATCCAAACAAAAGGAAATTCTCAAGgtttgttgatcaagaatatattggaatgtacagacttgccattttgtaaacaaactgttaacctggtttccatattcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA