1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
GCCTGGAAAGATGCAGACGGAGGAGACAGAAGTTGATGGTACTAACTCCTTCACAAGTTCAGTAAAAGTAAAAGCAAAACGCATACTGTCCAAGGCAAAGgtgatttgtttttcttgatagaactgattcaaaattttgtacctgtatttgactctcatctcatgtgatcttccttgcag
species | Oryza sativa |
transcript | LOC_Os02g31874.1 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: TCACAAGTTCAGTAAAAGTAAAAGCAAAACGCATACTGTCCAAGGCAAAG TCGGCTTGCTCCATGTCACTTGGCCTTGGGGAGGAGACCATCAGCGCTTCAEST: gi|87009876|gb|CI277377.1|CI277377
genomic: TCACAAGTTCAGTAAAAGTAAAAGCAAAACGCATACTGTCCAAGGCAAAGgtgatttgtt ... ttccttgcagTCGGCTTGCTCCATGTCACTTGGCCTTGGGGAGGAGACCATCAGCGCTTCA
EST: TCACAAGTTCAGTAAAAGTAAAAGCAGAACGCATACTGTCCAAGGCAAAG TCGGCTTGCTCCATGTCACTTGGCCTTGGGGAGGAGACCATCAGCGCTTCAEST: gi|88326986|gb|CI676100.1|CI676100
genomic: TCACAAGTTCAGTAAAAGTAAAAGCAAAACGCATACTGTCCAAGGCAAAGgtgatttgtt ... ttccttgcagTCGGCTTGCTCCATGTCACTTGGCCTTGGGGAGGAGACCATCAGCGCTTCA
EST: TCACAAGTTCAGTAAAAGTAAAAGCAAAACGCATACTGTCCAAGGCAAAG TCGGCTTGCTCCATGTCACTTGGCCTTGGGGAGGAGACCATCAGCGCTTCAEST: gi|88524670|gb|CI453510.1|CI453510
genomic: TCACAAGTTCAGTAAAAGTAAAAGCAAAACGCATACTGTCCAAGGCAAAGgtgatttgtt ... ttccttgcagTCGGCTTGCTCCATGTCACTTGGCCTTGGGGAGGAGACCATCAGCGCTTCA
EST: CTGTCCAAGGCAAAG TCGGCTTGCTCCATGTCACTTGGCCTTGGGGAGGAGACCATCAGCGCTTCAEST: gi|88361829|gb|CI681991.1|CI681991
genomic: CTGTCCAAGGCAAAGgtgatttgtt ... ttccttgcagTCGGCTTGCTCCATGTCACTTGGCCTTGGGGAGGAGACCATCAGCGCTTCA
EST: TCACAAGTTCAGTAAAAGTAAAAGCAAAACGCATACTGTCCAAGGCAAAG TCGGCTTGCTCCATGTCACTTGGCCTTGGGGAGGAGACCATCAGCGCTTCAEST: gi|86414917|gb|CI069320.1|CI069320
genomic: TCACAAGTTCAGTAAAAGTAAAAGCAAAACGCATACTGTCCAAGGCAAAGgtgatttgtt ... ttccttgcagTCGGCTTGCTCCATGTCACTTGGCCTTGGGGAGGAGACCATCAGCGCTTCA
EST: AACGCATACTGTCCAAGGCAAAG TCGGCTTGCTCCATGTCACTTGGCCTTGGGGAGGAGACCATCAGCGCTTCAEST: gi|89168294|gb|CI109498.1|CI109498
genomic: AACGCATACTGTCCAAGGCAAAGgtgatttgtt ... ttccttgcagTCGGCTTGCTCCATGTCACTTGGCCTTGGGGAGGAGACCATCAGCGCTTCA
EST: TCACAAGTTCAGTAAAAGTAAAAGCGAAACGCATACTGTCCAAGGCAAAG TCGGCTTGCTCCATGTCACTTGGCCTTGGGGAGGAGACCATCAGCGCTTCAEST: gi|4715558|gb|AU056674.1|AU056674
genomic: TCACAAGTTCAGTAAAAGTAAAAGCAAAACGCATACTGTCCAAGGCAAAGgtgatttgtt ... ttccttgcagTCGGCTTGCTCCATGTCACTTGGCCTTGGGGAGGAGACCATCAGCGCTTCA
EST: TCACAAGTTCAGTAAAAGTAAAAGCAAAACGCATACTGTCCAAGGCAAAG TCGGCTTGCTCCATGTCACTTGGCCTTGGGGAGGAGACCATCCAGCGCTTCEST: gi|86903740|gb|CI300594.1|CI300594
genomic: TCACAAGTTCAGTAAAAGTAAAAGCAAAACGCATACTGTCCAAGGCAAAGgtgatttgtt ... ttccttgcagTCGGCTTGCTCCATGTCACTTGGCCTTGGGGAGGAGACCAT-CAGCGCTTC
EST: CGCATACTGTCCAAGGCAAAG TCGGCTTGCTCCATGTCACTTGGCCTTGGGGAGGAGACCATCAGCGCTTCAEST: gi|88988717|gb|CI039136.1|CI039136
genomic: CGCATACTGTCCAAGGCAAAGgtgatttgtt ... ttccttgcagTCGGCTTGCTCCATGTCACTTGGCCTTGGGGAGGAGACCATCAGCGCTTCA
EST: CGCATACTGTCCAAGGCAAAG TCGGCTTGCTCCATGTCACTTGGCCTTGGGGAGGAGACCATCAGCGCTTCAEST: gi|86593918|gb|CI260147.1|CI260147
genomic: CGCATACTGTCCAAGGCAAAGgtgatttgtt ... ttccttgcagTCGGCTTGCTCCATGTCACTTGGCCTTGGGGAGGAGACCATCAGCGCTTCA
EST: TCACAAGTTCAGTAAAAGTAAAAGCAAAACGCATACTGTCCAAGGCAAAG TCGGCTTGCTCCATGTCACTTGGCCTTGGGGAGGAGACCATCAGCGCTTCA
genomic: TCACAAGTTCAGTAAAAGTAAAAGCAAAACGCATACTGTCCAAGGCAAAGgtgatttgtt ... ttccttgcagTCGGCTTGCTCCATGTCACTTGGCCTTGGGGAGGAGACCATCAGCGCTTCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCCTGGAAAGATGCAGACGGAGGAGACAGAAGTTGATGGTACTAACTCCTTCACAAGTTCAGTAAAAGTAAAAGCAAAACGCATACTGTCCAAGGCAAAGgtgatttgtttttcttgatagaactgattcaaaattttgtacctgtatttgactctcatctcatgtgatcttccttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG