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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCAACGCAGAGAATGGAAAAGCACCATGGGAAGGGgtaagcaaatacatatccttatgtaatctgcagttttaaatgttgtagatattcccaacgcatgaactctgtacagcacataaattcctcttacgatggtacgttttgtctcag

Basic information

species Oryza sativa
transcript LOC_Os02g19510.3
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g19510.1 (Oryza sativa), 5'ss of exon 14
lower sequence: GRMZM2G006507_T01 (Zea mays), 5'ss of exon 1
----------------------------------------------------------------GGCAACGCAGAGAATGGAAAAGCACCATGGGAAGGGgtaagcaaatacatatccttatgtaatctgcagttttaaatgttgtagatattcccaacgcatgaactctg-tacagca-cataaattcctcttacgatggtacgttttgtctcag------------------------
                                                                |||||  |||| ||||||| |||||||||||||||||||||    ||| | | || |||| || ||   |||| |  ||     ||||| | || ||||||  | |  | |  |  ||| || |     | |  | | |  || | |    |                        
GAAGATTGGAGTTGTTGATGCTCAATGGATTGTTCATCAAGCAGTTCCTTCACTTGGGAACCAGGGCAAGTCAGATAATGGAAGAGCACCATGGGAAGGGgtaaggtggtacttgtact-atgttatttggttttttcacagtatattatatttcaaatgcatgatttttactgctacggcatcaactatgtatccatttggattttctttaattgtctacacttaattgtccaccatag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|89168225|gb|CI109429.1|CI109429
EST:     GGCAACGCAGAGAATGGAAAAGCACCATGGGAAGGG                         GTAAGAGCACGCTGTAGGAAAGAATGGGAGATATTTCAAACGAGGCTGGCC
genomic: GGCAACGCAGAGAATGGAAAAGCACCATGGGAAGGGgtaagcaaat ... tttgtctcagGTAAGAGCACGCTGTAGGAAAGAATGGGAGATATTTCAAACGAGGCTGGCC
EST: gi|29673249|gb|CB669524.1|CB669524
EST:     GGCAACGCAGAGAATGGAAAAGCACCATGGGAAGGG                         GTAAGAGCACGCTGTAGGAAAGAATGGGAGATATTTCAAACGAGGCTGGCC
genomic: GGCAACGCAGAGAATGGAAAAGCACCATGGGAAGGGgtaagcaaat ... tttgtctcagGTAAGAGCACGCTGTAGGAAAGAATGGGAGATATTTCAAACGAGGCTGGCC
EST: gi|86851667|gb|CI315245.1|CI315245
EST:     GAATGGAAAAGCACCAT-GGAAGGG                         GTAAGAGCACGCTGTA-GAAAGAATGGGAAATATTTCAAACGAGGGTGGCC
genomic: GAATGGAAAAGCACCATGGGAAGGGgtaagcaaat ... tttgtctcagGTAAGAGCACGCTGTAGGAAAGAATGGGAGATATTTCAAACGAGGCTGGCC
EST: gi|86879993|gb|CI340030.1|CI340030
EST:     GAATGGAAAAGCACCATGGGAAGGG                         GTAAGAGCACGCTGTAGGAAAGAATGGGAGATATTTCAAACGAGGCTGGCC
genomic: GAATGGAAAAGCACCATGGGAAGGGgtaagcaaat ... tttgtctcagGTAAGAGCACGCTGTAGGAAAGAATGGGAGATATTTCAAACGAGGCTGGCC
EST: gi|29680675|gb|CB676950.1|CB676950
EST:     GGCAACGCAGAGAATGGAAAAGCACCATGGGAAGGG                         GTAAGAGCACGCTGTAGGAAAGAATGGGAGATATTTCAAACGAGGCTGGCC
genomic: GGCAACGCAGAGAATGGAAAAGCACCATGGGAAGGGgtaagcaaat ... tttgtctcagGTAAGAGCACGCTGTAGGAAAGAATGGGAGATATTTCAAACGAGGCTGGCC
EST: gi|88956524|gb|CI092758.1|CI092758
EST:     GGCAACGCAGAGAATGGAAAAGCACCATGGGAAGGG                         GTAAGAGCACGCTGTAGGAAAGAATGGGAGATATTTCAAACGAGGCTGGCC
genomic: GGCAACGCAGAGAATGGAAAAGCACCATGGGAAGGGgtaagcaaat ... tttgtctcagGTAAGAGCACGCTGTAGGAAAGAATGGGAGATATTTCAAACGAGGCTGGCC
EST: gi|89184026|gb|CI046591.1|CI046591
EST:     GGCAACGCAGAGAATGGAAAAGCACCATGGGAAGGG                         GTAAGAGCACGCTGTAGGAAAGAATGGGAGATATTTCAAACGAGGCTGGCC
genomic: GGCAACGCAGAGAATGGAAAAGCACCATGGGAAGGGgtaagcaaat ... tttgtctcagGTAAGAGCACGCTGTAGGAAAGAATGGGAGATATTTCAAACGAGGCTGGCC
EST: gi|88957228|gb|CI095213.1|CI095213
EST:     CACCATGGGAAGGG                         GTAAGAGCACGCTGTAGGAAAGAATGGGAGATATTTCAAACGAGGCTGGCC
genomic: CACCATGGGAAGGGgtaagcaaat ... tttgtctcagGTAAGAGCACGCTGTAGGAAAGAATGGGAGATATTTCAAACGAGGCTGGCC
EST: gi|29616239|gb|CB621251.1|CB621251
EST:     GGCAACGCAGAGAATGGAAAAGCACCATGGGAAGGG                         GTAAGAGCACGCTGTAGGAAAGAATGGGAGATATTTCAAACGAGGCTGGCC
genomic: GGCAACGCAGAGAATGGAAAAGCACCATGGGAAGGGgtaagcaaat ... tttgtctcagGTAAGAGCACGCTGTAGGAAAGAATGGGAGATATTTCAAACGAGGCTGGCC
EST: gi|88904274|gb|CI002007.1|CI002007
EST:     GGCAACGCAGAGAATGGAAAAGCACCATGGGAAGGG                         GTAAGAGCACGCTGTAGGAAAGAATGGGAGATATTTCAAACGAGGCTGGCC
genomic: GGCAACGCAGAGAATGGAAAAGCACCATGGGAAGGGgtaagcaaat ... tttgtctcagGTAAGAGCACGCTGTAGGAAAGAATGGGAGATATTTCAAACGAGGCTGGCC
EST: gi|29641724|gb|CB646731.1|CB646731
EST:     GGCAACGCAGAGAATGGAAAAGCACCATGGGAAGGG                         GTAAGAGCACGCTGTAGGAAAGAATGGGAGATATTTCAAACGAGGCTGGCC
genomic: GGCAACGCAGAGAATGGAAAAGCACCATGGGAAGGGgtaagcaaat ... tttgtctcagGTAAGAGCACGCTGTAGGAAAGAATGGGAGATATTTCAAACGAGGCTGGCC
EST: gi|89190777|gb|CI392630.1|CI392630
EST:     AACGCAGAGAATGGAAAAGCACCATGGGAA-GG                         GTAAGAGCACGCTGTAGGAAAGAATGGGAGATATTTCAAACGAGGCTGGCC
genomic: AACGCAGAGAATGGAAAAGCACCATGGGAAGGGgtaagcaaat ... tttgtctcagGTAAGAGCACGCTGTAGGAAAGAATGGGAGATATTTCAAACGAGGCTGGCC
EST: gi|86414599|gb|CI069002.1|CI069002
EST:     AGCACCATGGGAAGGG                         GTAAGAGCACGCTGTAGGAAAGAATGGGAGATATTTCAAACGAGGCTGGCC
genomic: AGCACCATGGGAAGGGgtaagcaaat ... tttgtctcagGTAAGAGCACGCTGTAGGAAAGAATGGGAGATATTTCAAACGAGGCTGGCC
EST: gi|29641418|gb|CB646425.1|CB646425
EST:     GGCAACGCAGAGAATGGAAAAGCACCATGGGAAGGG                         GTAAGAGCACGCTGTAGGAAAGAATGGGAGATATTTCAAACGAGGCTGGCC
genomic: GGCAACGCAGAGAATGGAAAAGCACCATGGGAAGGGgtaagcaaat ... tttgtctcagGTAAGAGCACGCTGTAGGAAAGAATGGGAGATATTTCAAACGAGGCTGGCC
EST: gi|58695050|gb|CK083737.1|CK083737
EST:     GGCAACGCAGAGAATGGAAAAGCACCATGGGAAGGG                         GTAAGAGCACGCTGTAGGAAAGAATGGGAGATATTTCAAACGAGGCTGGCC
genomic: GGCAACGCAGAGAATGGAAAAGCACCATGGGAAGGGgtaagcaaat ... tttgtctcagGTAAGAGCACGCTGTAGGAAAGAATGGGAGATATTTCAAACGAGGCTGGCC
EST: gi|58596057|gb|CK006585.1|CK006585
EST:     AGCAACGCAGAGAATGGAAAAGCACCATGGGAAGGG                         GTAAGAGCACGCTGTAGGAAAGAATGGGAGATATTTCAAACGAGGCTGGCC
genomic: GGCAACGCAGAGAATGGAAAAGCACCATGGGAAGGGgtaagcaaat ... tttgtctcagGTAAGAGCACGCTGTAGGAAAGAATGGGAGATATTTCAAACGAGGCTGGCC
EST: gi|29676039|gb|CB672314.1|CB672314
EST:     GGCAACGCAGAGAATGGAAAAGCACCATGGGAAGGG                         GTAAGAGCACGCTGTAGGAAAGAATGGGAGATATTTCAAACGAGGCTGGCC
genomic: GGCAACGCAGAGAATGGAAAAGCACCATGGGAAGGGgtaagcaaat ... tttgtctcagGTAAGAGCACGCTGTAGGAAAGAATGGGAGATATTTCAAACGAGGCTGGCC
EST: gi|86892851|gb|CI312140.1|CI312140
EST:     GGCAACGCCAGAGAATGGAAAAGCACCATGGGAAGGG                         GTAAGAGCACGCTGTAGGAAAGAATGGGAGATATTTCAAACGAGGCTGGCC
genomic: GGCAACG-CAGAGAATGGAAAAGCACCATGGGAAGGGgtaagcaaat ... tttgtctcagGTAAGAGCACGCTGTAGGAAAGAATGGGAGATATTTCAAACGAGGCTGGCC
EST: gi|88903053|gb|CI088591.1|CI088591
EST:     AAAAGCACCATGGGAAGGG                         GTAAGAGCACGCTGTAGGAAAGAATGGGAGATATTTCACACGAGGCTGGCC
genomic: AAAAGCACCATGGGAAGGGgtaagcaaat ... tttgtctcagGTAAGAGCACGCTGTAGGAAAGAATGGGAGATATTTCAAACGAGGCTGGCC
EST: gi|86869962|gb|CI316690.1|CI316690
EST:     GGCAACGCAGAGAACGGAAAAGCACCATGGGAAGGG                         GTAAGAGCACGCTGTA-GAAAGAAT-GGAGATATTTCAAACGAGGCTGGCC
genomic: GGCAACGCAGAGAATGGAAAAGCACCATGGGAAGGGgtaagcaaat ... tttgtctcagGTAAGAGCACGCTGTAGGAAAGAATGGGAGATATTTCAAACGAGGCTGGCC
EST: gi|38475807|gb|CF959940.1|CF959940
EST:     NGCAACGCAGAGAATGGAAAAGCACCATGGGAAGGG                         GTAAGAGCACGCTGTAGGAAAGAATGGGAGATATTTCAAACGAGGCTGGCC
genomic: GGCAACGCAGAGAATGGAAAAGCACCATGGGAAGGGgtaagcaaat ... tttgtctcagGTAAGAGCACGCTGTAGGAAAGAATGGGAGATATTTCAAACGAGGCTGGCC
EST: gi|88271774|gb|CI387827.1|CI387827
EST:     GCACCAT-GGAAGGG                         GTAAGAGCACCCTGTA-GAAAGAATGGGAGATATTTCAAAGCGAGGCTGGC
genomic: GCACCATGGGAAGGGgtaagcaaat ... tttgtctcagGTAAGAGCACGCTGTAGGAAAGAATGGGAGATATTTCAAA-CGAGGCTGGC
EST: gi|33795503|gb|CF323621.1|CF323621
EST:     GGCAACGCAGAGAATGGAAAAGCACCATGGGAAGGG                         GTAAGAGCACGCTGTAGGAAAGAATGGGAGATATTTCAAACGAGGCTGGCC
genomic: GGCAACGCAGAGAATGGAAAAGCACCATGGGAAGGGgtaagcaaat ... tttgtctcagGTAAGAGCACGCTGTAGGAAAGAATGGGAGATATTTCAAACGAGGCTGGCC
EST: gi|38478883|gb|CF963016.1|CF963016
EST:     GGCAACGCAGAGAATGGAAAAGCACCATGNGGAAGGG                         GTAAGAGCACGCTGTAGGAAAGAATGGGAGATATTTCAAACGAGGCTGGC
genomic: GGCAACGCAGAGAATGGAAAAGCACCATG-GGAAGGGgtaagcaaat ... tttgtctcagGTAAGAGCACGCTGTAGGAAAGAATGGGAGATATTTCAAACGAGGCTGGC
EST: gi|86892855|gb|CI312142.1|CI312142
EST:     GGCAACGCAGAGAATGGAAAAGCACCATGGGAAGGG                         GTAAGAGCACGCTGTAGGAAAGAATGGGAGATATTTCAAACGAGGCTGGCC
genomic: GGCAACGCAGAGAATGGAAAAGCACCATGGGAAGGGgtaagcaaat ... tttgtctcagGTAAGAGCACGCTGTAGGAAAGAATGGGAGATATTTCAAACGAGGCTGGCC
EST: gi|58685144|gb|CK073831.1|CK073831
EST:     TGCAACGCAGAGAATGGAAAAGCACCATGGGAAGGG                         GTAAGAGCACGCTGTAGGAAAGAATGGGAGATATTTCAAACGATGCTGGCC
genomic: GGCAACGCAGAGAATGGAAAAGCACCATGGGAAGGGgtaagcaaat ... tttgtctcagGTAAGAGCACGCTGTAGGAAAGAATGGGAGATATTTCAAACGAGGCTGGCC
EST: gi|27577797|gb|CB000492.1|CB000492
EST:     GGCAACGCAGAGAATGGAAAAGCACCATGGGAA--G                         G---GAGCACGCTGTAGGAAAGAATGGGAGATATTTCAAACGAGGCTGGCC
genomic: GGCAACGCAGAGAATGGAAAAGCACCATGGGAAGGGgtaagcaaat ... tttgtctcagGTAAGAGCACGCTGTAGGAAAGAATGGGAGATATTTCAAACGAGGCTGGCC
EST: gi|86433701|gb|CI094044.1|CI094044
EST:     CCATGGGAAGGG                         GTAAGAGCACGCTGTAGGAAAGAATGGGAGATATTTCAAACGAGGCTGGCC
genomic: CCATGGGAAGGGgtaagcaaat ... tttgtctcagGTAAGAGCACGCTGTAGGAAAGAATGGGAGATATTTCAAACGAGGCTGGCC
EST: gi|58603030|gb|CK013558.1|CK013558
EST:     GGCAACGCAGAGAATGGAAAAGCACCATGGGAAGGG                         GTAAGAGCACGCTGTAGGAAAGAATGGGAGATATTTCAAACGAGGCTGGCC
genomic: GGCAACGCAGAGAATGGAAAAGCACCATGGGAAGGGgtaagcaaat ... tttgtctcagGTAAGAGCACGCTGTAGGAAAGAATGGGAGATATTTCAAACGAGGCTGGCC