1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
CCTGCTCATGAGAAGATTGGAGTCGTCGATGCTCAATGGATTGTTCATCAAGCTGTGCCATCACTTGGAAACCAGgttagcccctagccaactatttagtgtactgtccttcattttgctcagtgaaactgtgtaacctgatcttgcactactttaccttgcag
species | Oryza sativa |
transcript | LOC_Os02g19510.1 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: GTGCCATCACTTGGAAACCAG GGCAACGCAGAGAATGGAAAAGCACCATGGGAAGGGEST: gi|29673249|gb|CB669524.1|CB669524
genomic: GTGCCATCACTTGGAAACCAGgttagcccct ... taccttgcagGGCAACGCAGAGAATGGAAAAGCACCATGGGAAGGG
EST: TCGATGCTCAATGGATTGTTCATCAAGCTGTGCCATCACTTGGAAACCAG GGCAACGCAGAGAATGGAAAAGCACCATGGGAAGGGEST: gi|29680675|gb|CB676950.1|CB676950
genomic: TCGATGCTCAATGGATTGTTCATCAAGCTGTGCCATCACTTGGAAACCAGgttagcccct ... taccttgcagGGCAACGCAGAGAATGGAAAAGCACCATGGGAAGGG
EST: TCGATGCTCAATGGATTGTTCATCAAGCTGTGCCATCACTTGGAAACCAG GGCAACGCAGAGAATGGAAAAGCACCATGGGAAGGGEST: gi|88956524|gb|CI092758.1|CI092758
genomic: TCGATGCTCAATGGATTGTTCATCAAGCTGTGCCATCACTTGGAAACCAGgttagcccct ... taccttgcagGGCAACGCAGAGAATGGAAAAGCACCATGGGAAGGG
EST: TCAAGCTGTGCCATCACTTGGAAACCAG GGCAACGCAGAGAATGGAAAAGCACCATGGGAAGGGEST: gi|89184026|gb|CI046591.1|CI046591
genomic: TCAAGCTGTGCCATCACTTGGAAACCAGgttagcccct ... taccttgcagGGCAACGCAGAGAATGGAAAAGCACCATGGGAAGGG
EST: TCGATGCTCAATGGATTGTTCATCAAGCTGTGCCATCACTTGGAAACCAG GGCAACGCAGAGAATGGAAAAGCACCATGGGAAGGGEST: gi|29616239|gb|CB621251.1|CB621251
genomic: TCGATGCTCAATGGATTGTTCATCAAGCTGTGCCATCACTTGGAAACCAGgttagcccct ... taccttgcagGGCAACGCAGAGAATGGAAAAGCACCATGGGAAGGG
EST: TTGATGCTCAATGGATTGTTCATCAAGCTGTGCCATCACTTGGAAACCAG GGCAACGCAGAGAATGGAAAAGCACCATGGGAAGGGEST: gi|88904274|gb|CI002007.1|CI002007
genomic: TCGATGCTCAATGGATTGTTCATCAAGCTGTGCCATCACTTGGAAACCAGgttagcccct ... taccttgcagGGCAACGCAGAGAATGGAAAAGCACCATGGGAAGGG
EST: TCGATGCTCAATGGATTGTTCATCAAGCTGTGCCATCACTTGGAAACCAG GGCAACGCAGAGAATGGAAAAGCACCATGGGAAGGGEST: gi|29641724|gb|CB646731.1|CB646731
genomic: TCGATGCTCAATGGATTGTTCATCAAGCTGTGCCATCACTTGGAAACCAGgttagcccct ... taccttgcagGGCAACGCAGAGAATGGAAAAGCACCATGGGAAGGG
EST: TCGATGCTCAATGGATTGTTCATCAAGCTGTGCCATCACTTGGAAACCAG GGCAACGCAGAGAATGGAAAAGCACCATGGGAAGGGEST: gi|29641418|gb|CB646425.1|CB646425
genomic: TCGATGCTCAATGGATTGTTCATCAAGCTGTGCCATCACTTGGAAACCAGgttagcccct ... taccttgcagGGCAACGCAGAGAATGGAAAAGCACCATGGGAAGGG
EST: TCGATGCTCAATGGATTGTTCATCAAGCTGTGCCATCACTTGGAAACCAG GGCAACGCAGAGAATGGAAAAGCACCATGGGAAGGGEST: gi|58695050|gb|CK083737.1|CK083737
genomic: TCGATGCTCAATGGATTGTTCATCAAGCTGTGCCATCACTTGGAAACCAGgttagcccct ... taccttgcagGGCAACGCAGAGAATGGAAAAGCACCATGGGAAGGG
EST: TTGATGCTCAATGGATTGTTCATCAAGCTGTGCCATCACTTGGAAACCAG GGCAACGCAGAGAATGGAAAAGCACCATGGGAAGGGEST: gi|58596057|gb|CK006585.1|CK006585
genomic: TCGATGCTCAATGGATTGTTCATCAAGCTGTGCCATCACTTGGAAACCAGgttagcccct ... taccttgcagGGCAACGCAGAGAATGGAAAAGCACCATGGGAAGGG
EST: TTGATGCTCAATGGATTGTTCATCAAGCTGTGCCATCACTTGGAAACCAG AGCAACGCAGAGAATGGAAAAGCACCATGGGAAGGGEST: gi|29676039|gb|CB672314.1|CB672314
genomic: TCGATGCTCAATGGATTGTTCATCAAGCTGTGCCATCACTTGGAAACCAGgttagcccct ... taccttgcagGGCAACGCAGAGAATGGAAAAGCACCATGGGAAGGG
EST: TCGATGCTCAATGGATTGTTCATCAAGCTGTGCCATCACTTGGAAACCAG GGCAACGCAGAGAATGGAAAAGCACCATGGGAAGGGEST: gi|86892851|gb|CI312140.1|CI312140
genomic: TCGATGCTCAATGGATTGTTCATCAAGCTGTGCCATCACTTGGAAACCAGgttagcccct ... taccttgcagGGCAACGCAGAGAATGGAAAAGCACCATGGGAAGGG
EST: CAATGGATTGTTTCATCCAAGCTTG-GCCATCAACTTGGAAACCAG GGCAACGCCAGAGAATGGAAAAGCACCATGGGAAGGGEST: gi|86869962|gb|CI316690.1|CI316690
genomic: CAATGGATTG-TTCAT-CAAGC-TGTGCCATC-ACTTGGAAACCAGgttagcccct ... taccttgcagGGCAACG-CAGAGAATGGAAAAGCACCATGGGAAGGG
EST: ATCACATGGAAACCAG GGCAACGCAGAGAACGGAAAAGCACCATGGGAAGGGEST: gi|38475807|gb|CF959940.1|CF959940
genomic: ATCACTTGGAAACCAGgttagcccct ... taccttgcagGGCAACGCAGAGAATGGAAAAGCACCATGGGAAGGG
EST: TTGATGCTCAATGGATTGTTCATCAAGCTGTGCCATCACTTGGAAACCAG NGCAACGCAGAGAATGGAAAAGCACCATGGGAAGGGEST: gi|33795503|gb|CF323621.1|CF323621
genomic: TCGATGCTCAATGGATTGTTCATCAAGCTGTGCCATCACTTGGAAACCAGgttagcccct ... taccttgcagGGCAACGCAGAGAATGGAAAAGCACCATGGGAAGGG
EST: TCGATGCTCAATGGATTGTTCATCAAGCTGTGCCATCACTTGGAAACCAG GGCAACGCAGAGAATGGAAAAGCACCATGGGAAGGGEST: gi|38478883|gb|CF963016.1|CF963016
genomic: TCGATGCTCAATGGATTGTTCATCAAGCTGTGCCATCACTTGGAAACCAGgttagcccct ... taccttgcagGGCAACGCAGAGAATGGAAAAGCACCATGGGAAGGG
EST: TTGATGCTCAATGGATTGTTCATCAAGCTGTGCCATCACTTGGAAACCAG GGCAACGCAGAGAATGGAAAAGCACCATGNGGAAGGGEST: gi|86892855|gb|CI312142.1|CI312142
genomic: TCGATGCTCAATGGATTGTTCATCAAGCTGTGCCATCACTTGGAAACCAGgttagcccct ... taccttgcagGGCAACGCAGAGAATGGAAAAGCACCATG-GGAAGGG
EST: CGATGCTCAATGGATTGTTTCATCAAGCTGTGCCATCACTTGGAAACCAG GGCAACGCAGAGAATGGAAAAGCACCATGGGAAGGGEST: gi|58685144|gb|CK073831.1|CK073831
genomic: CGATGCTCAATGGATTG-TTCATCAAGCTGTGCCATCACTTGGAAACCAGgttagcccct ... taccttgcagGGCAACGCAGAGAATGGAAAAGCACCATGGGAAGGG
EST: TTGATGCTCAATGGATTGTTCATCAAGCTGTGCCATCACTTGGAAACCAG TGCAACGCAGAGAATGGAAAAGCACCATGGGAAGGGEST: gi|27577797|gb|CB000492.1|CB000492
genomic: TCGATGCTCAATGGATTGTTCATCAAGCTGTGCCATCACTTGGAAACCAGgttagcccct ... taccttgcagGGCAACGCAGAGAATGGAAAAGCACCATGGGAAGGG
EST: TCGATGCTCAATGGATTGTTCATCAAGCTGTGCCATCACTTGGAAACCAG GGCAACGCAGAGAATGGAAAAGCACCATGGGAA--GEST: gi|58603030|gb|CK013558.1|CK013558
genomic: TCGATGCTCAATGGATTGTTCATCAAGCTGTGCCATCACTTGGAAACCAGgttagcccct ... taccttgcagGGCAACGCAGAGAATGGAAAAGCACCATGGGAAGGG
EST: TTGATGCTCAATGGATTGTTCATCAAGCTGTGCCATCACTTGGAAACCAG GGCAACGCAGAGAATGGAAAAGCACCATGGGAAGGG
genomic: TCGATGCTCAATGGATTGTTCATCAAGCTGTGCCATCACTTGGAAACCAGgttagcccct ... taccttgcagGGCAACGCAGAGAATGGAAAAGCACCATGGGAAGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCTGCTCATGAGAAGATTGGAGTCGTCGATGCTCAATGGATTGTTCATCAAGCTGTGCCATCACTTGGAAACCAGgttagcccctagccaactatttagtgtactgtccttcattttgctcagtgaaactgtgtaacctgatcttgcactactttaccttgcag
- - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - AAGCTG