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CTAATCTATCACAATTTACCGAAAGATATTGCAAACAGGCATGTGCTGTTGTTGGATCCCATACTGGGAACAGgtatgttgatgattctcacatatccttcctgttgttacatgaattttgttcttgtgctcactggagcacttctgcctccacctatctcatgtaaaagaga...
species | Oryza sativa |
transcript | LOC_Os02g17320.1 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: AGATATTGCAAACAGGCATGTGCTGTTGTTGGATCCCATACTGGGAACAG GAAATTCAGCTGTTCAAGCTATATCTCTACTCTTGAAAAAGGGTGTACAGGEST: gi|87037876|gb|CI192498.1|CI192498
genomic: AGATATTGCAAACAGGCATGTGCTGTTGTTGGATCCCATACTGGGAACAGgtatgttgat ... atcataccagGAAATTCAGCTGTTCAAGCTATATCTCTACTCTTGAAAAAGGGTGTACAGG
EST: AGATATTGCAAACAGGCATGTGCTGTTGTTGGATCCCATACTGGGAACAG GAAATTCAGCTGTTCAAGCTATATCTCTACTCTTGAAAAAGGGTGTACAGGEST: gi|3760815|gb|C98069.1|C98069
genomic: AGATATTGCAAACAGGCATGTGCTGTTGTTGGATCCCATACTGGGAACAGgtatgttgat ... atcataccagGAAATTCAGCTGTTCAAGCTATATCTCTACTCTTGAAAAAGGGTGTACAGG
EST: AGATATTGCAAACAGGCATGTGCTGTTGTTGGATCCCATACTGGGAACAG GAAATTCAGCTGTTCAAGCTATATCTCTACTCTTGAAAAAGGGTGTACAGGEST: gi|87029276|gb|CI276544.1|CI276544
genomic: AGATATTGCAAACAGGCATGTGCTGTTGTTGGATCCCATACTGGGAACAGgtatgttgat ... atcataccagGAAATTCAGCTGTTCAAGCTATATCTCTACTCTTGAAAAAGGGTGTACAGG
EST: AGATATTGCAAACAGGCATGTGCTGTTGTTGGATCCCATACTGGGAACAG GAAATTCAGCTGTTCAAGCTATATCTCTACTCTTGAAAAAGGGTGTACAGGEST: gi|88233330|gb|CI233179.1|CI233179
genomic: AGATATTGCAAACAGGCATGTGCTGTTGTTGGATCCCATACTGGGAACAGgtatgttgat ... atcataccagGAAATTCAGCTGTTCAAGCTATATCTCTACTCTTGAAAAAGGGTGTACAGG
EST: AGATATTGCAAACAGGCATGTGCTGTCGTTGGATCCCATACTGGGAACAG GAAATTCAGCTGTTCAAGCTATATCTCTACTCTTGAAAAAGGGTGTACAGGEST: gi|86498530|gb|CI141163.1|CI141163
genomic: AGATATTGCAAACAGGCATGTGCTGTTGTTGGATCCCATACTGGGAACAGgtatgttgat ... atcataccagGAAATTCAGCTGTTCAAGCTATATCTCTACTCTTGAAAAAGGGTGTACAGG
EST: AGATATTGCAAACAGGCATGTGCTGTTGTTGGATCCCATACTGGGAACAG GAAATTCAGCTGTTCAAGCTATATCTCTACTCTTGAAAAAGGGTGTACAGGEST: gi|29675373|gb|CB671648.1|CB671648
genomic: AGATATTGCAAACAGGCATGTGCTGTTGTTGGATCCCATACTGGGAACAGgtatgttgat ... atcataccagGAAATTCAGCTGTTCAAGCTATATCTCTACTCTTGAAAAAGGGTGTACAGG
EST: AGATATTGCAAACAGGCATGTGCTGTTGTTGGATCCCATACTGGGAACAG GAAATTCAGCTGTTCAAGCTATATCTCTACTCTTGAAAAAGGGTGTACAGGEST: gi|29627016|gb|CB632027.1|CB632027
genomic: AGATATTGCAAACAGGCATGTGCTGTTGTTGGATCCCATACTGGGAACAGgtatgttgat ... atcataccagGAAATTCAGCTGTTCAAGCTATATCTCTACTCTTGAAAAAGGGTGTACAGG
EST: AGATATTGCAAACAGGCATGTGCTGTTGTTGGATCCCATACTGGGAACAG GAAATTCAGCTGTTCAAGCTATATCTCTACTCTTGAAAAAGGGTGTACAGGEST: gi|86537180|gb|CI177386.1|CI177386
genomic: AGATATTGCAAACAGGCATGTGCTGTTGTTGGATCCCATACTGGGAACAGgtatgttgat ... atcataccagGAAATTCAGCTGTTCAAGCTATATCTCTACTCTTGAAAAAGGGTGTACAGG
EST: AGATATTGCAAACAGGCATGTGCTGTTGTTGGATCCCATACTGGGAACAG GAAATTCAGCTGTTCAAGCTATATCTCTACTCTTGAAAAAGGGTGTACAGGEST: gi|29669519|gb|CB665794.1|CB665794
genomic: AGATATTGCAAACAGGCATGTGCTGTTGTTGGATCCCATACTGGGAACAGgtatgttgat ... atcataccagGAAATTCAGCTGTTCAAGCTATATCTCTACTCTTGAAAAAGGGTGTACAGG
EST: AGGCATGTGCTGTTGTTGGATCCCATACTGGGAACAG GAAATTCAGCTGTTCAAGCTATATCTCTACTCTTGAAAAAGGGTGTACAGGEST: gi|29643326|gb|CB648333.1|CB648333
genomic: AGGCATGTGCTGTTGTTGGATCCCATACTGGGAACAGgtatgttgat ... atcataccagGAAATTCAGCTGTTCAAGCTATATCTCTACTCTTGAAAAAGGGTGTACAGG
EST: AGATATTGCAAACAGGCATGTGCTGTTGTTGGATCCCATACTGGGAACAG GAAATTCAGCTGTTCAAGCTATATCTCTACTCTTGAAAAAGGGTGTACAGGEST: gi|86536638|gb|CI176844.1|CI176844
genomic: AGATATTGCAAACAGGCATGTGCTGTTGTTGGATCCCATACTGGGAACAGgtatgttgat ... atcataccagGAAATTCAGCTGTTCAAGCTATATCTCTACTCTTGAAAAAGGGTGTACAGG
EST: AGATATTGCAAACAGGCATGTGCTGTTGTTGGATCCCATACTGGGAACAG GAAATTCAGCTGTTCAAGCTATATCTCTACTCTTGAAAAAGGGTGTACAGGEST: gi|86486730|gb|CI129363.1|CI129363
genomic: AGATATTGCAAACAGGCATGTGCTGTTGTTGGATCCCATACTGGGAACAGgtatgttgat ... atcataccagGAAATTCAGCTGTTCAAGCTATATCTCTACTCTTGAAAAAGGGTGTACAGG
EST: GTTGGATCCCATACTGGGAACAG GAAATTCAGCTGTTCAAGCTATATCTCTACTCTTGAAAAAGGGTGTACAGG
genomic: GTTGGATCCCATACTGGGAACAGgtatgttgat ... atcataccagGAAATTCAGCTGTTCAAGCTATATCTCTACTCTTGAAAAAGGGTGTACAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTAATCTATCACAATTTACCGAAAGATATTGCAAACAGGCATGTGCTGTTGTTGGATCCCATACTGGGAACAGgtatgttgatgattctcacatatccttcctgttgttacatgaattttgttcttgtgctcactggagcacttctgcctccacctatctcatgtaaaagaga
- - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctccacc