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CCAAAGCAGCAGAATCATTGGCAGATCCTGACGAGTACCCAAACTTGTTTGAAGACTGGCAAATTGCTCTCAATGTAGAAGCTAATGTCGCGCCCAAAAGgtatgttcgtaaaagtaaaaactatgttcttttgtgaaagttttaccagttctctcttccatgcatgggacaagtcgtcaaggtttgctttcctcttctc...
species | Oryza sativa |
transcript | LOC_Os02g11840.2 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: GAAGACTGGCAAATTGCTCTCAATGTAGAAGCTAATGTCGCGCCCAAAAG GGGTATTTATCCACCAGCTGAGGAGTACATTATCCATGCTGAGAGGCCCAAEST: gi|87021165|gb|CI271972.1|CI271972
genomic: GAAGACTGGCAAATTGCTCTCAATGTAGAAGCTAATGTCGCGCCCAAAAGgtatgttcgt ... gtttgaatagGGGTATTTATCCACCAGCTGAGGAGTACATTATCCATGCTGAGAGGCCCAA
EST: GAAGACTGGCAAATTGCTCTCAATGTAGAAGCTAATGTCGCGCCCAAAAG GGGTATTTATCCACCAGCTGAGGAGTACATTATCCATGCTGAGAGGCCCAAEST: gi|86481559|gb|CI124192.1|CI124192
genomic: GAAGACTGGCAAATTGCTCTCAATGTAGAAGCTAATGTCGCGCCCAAAAGgtatgttcgt ... gtttgaatagGGGTATTTATCCACCAGCTGAGGAGTACATTATCCATGCTGAGAGGCCCAA
EST: GAAGACTGGCAAATGGCTCTCAATGTAGAAGCTAATGTCGCGCCCAAAAG GGGTATTTATCCACCAGCTGAGGAGTACATTATCCATGCTGAGAGGCCCAAEST: gi|86478917|gb|CI121550.1|CI121550
genomic: GAAGACTGGCAAATTGCTCTCAATGTAGAAGCTAATGTCGCGCCCAAAAGgtatgttcgt ... gtttgaatagGGGTATTTATCCACCAGCTGAGGAGTACATTATCCATGCTGAGAGGCCCAA
EST: AAGACTGGCAAATTGCTCTCAATGTAGAAGCTAATGTCGCGCCCAAAAG GGGTATTTATCCACCAGCTGAGGAGTACATTATCCATGCTGAGAGGCCCAAEST: gi|2797452|gb|AA750746.1|AA750746
genomic: AAGACTGGCAAATTGCTCTCAATGTAGAAGCTAATGTCGCGCCCAAAAGgtatgttcgt ... gtttgaatagGGGTATTTATCCACCAGCTGAGGAGTACATTATCCATGCTGAGAGGCCCAA
EST: GAAGACTGGCAAATTGCTCTCAATGTAGAAGCTAATGTCGCGCCCAAAAG GGGTATTTATCCACCAGCTGAGGAGTACATTATCCATGCTGAGAGGCCCAA
genomic: GAAGACTGGCAAATTGCTCTCAATGTAGAAGCTAATGTCGCGCCCAAAAGgtatgttcgt ... gtttgaatagGGGTATTTATCCACCAGCTGAGGAGTACATTATCCATGCTGAGAGGCCCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCAAAGCAGCAGAATCATTGGCAGATCCTGACGAGTACCCAAACTTGTTTGAAGACTGGCAAATTGCTCTCAATGTAGAAGCTAATGTCGCGCCCAAAAGgtatgttcgtaaaagtaaaaactatgttcttttgtgaaagttttaccagttctctcttccatgcatgggacaagtcgtcaaggtttgctttcctcttctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agtaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctctcttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctcttc