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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGCTAACATGGAATGGGCAGAAGGAGATATCAGTTGGAAACTCGACCCGCAAGTTCCTAGAAGATGGGGATGAGGTCATCTTGACAGCTTGTTGCAAGgtacagcaatctcataagtcttgatcaaaccaaatttagagctcttttcgtctaaaacaaatatctttgaagattccatgctctatcttgatgccatccatctacatgtttttacag

Basic information

species Oryza sativa
transcript LOC_Os02g10310.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g10310.1 (Oryza sativa), 5'ss of exon 13
lower sequence: GRMZM2G029566_T03 (Zea mays), 5'ss of exon 1
GGAGCTAACATGGAATGGGCAGAAGGAGATATCAGTTGGAAACTCGACCCGCAAGTTCCTAGAAGATGGGGATGAGGTCATCTTGACAGCTTGTTGCAAGgtacagcaatctcataagtcttgatcaaaccaaatttagagctcttttcgtctaaaacaaatatctttgaagattccatgctctatcttgatgccatccatctacatgtttttacag
|||||| |||||||| ||||||||||||||| | || || || | |||||||||||||||||||||||| ||||| |||||||||||||  ||||||||||||| |  |  || |   || |||||||  || || |||  ||||           |||            ||  | | ||| ||| ||||| ||| |||||  | || || | |||
GGAGCTGACATGGAACGGGCAGAAGGAGATACCGGTGGGGAATTTGACCCGCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAGgtactgtgagttcgtctttcctgatcaattcagatctaggcctct-----------acagt----------gacgctaggctgtattttgattcca-ccatccgc-tggttcttcag

upper sequence: LOC_Os02g10310.1 (Oryza sativa), 5'ss of exon 13
lower sequence: GRMZM2G093359_T01 (Zea mays), 5'ss of exon 13
GGAGCTAACATGGAATGGGCAGAAGGAGATATCAGTTGGAAACTCGACCCGCAAGTTCCTAGAAGATGGGGATGAGGTCATCTTGACAGCTTGTTGCAAGgtacagcaatctcataagtcttgatcaaaccaaatttagagctcttttcgtctaaaacaaatatctttgaagattccatgctctatc-ttgatgccatccatctacatgtttttacag
||||||||||||||| ||||||||||||||| |||| || || | |||||||||||| ||||||||||| |||||||||||||||||||  || |||||||||  |  |  |  |   || || ||||  ||||| |||  |||| |                     |  ||| ||  ||| |||| |||||    |||||||||  ||| || |||
GGAGCTAACATGGAACGGGCAGAAGGAGATACCAGTGGGCAATTTGACCCGCAAGTTTCTAGAAGATGGAGATGAGGTCATCTTGACAGGATGCTGCAAGgtattgtgaatttttctttcctggtcaactcaaatctaggcctctat---------------------ggtgatgccgggctgtatccttgat----tccatctaccggttctt-cag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29660372|gb|CB656647.1|CB656647
EST:     GCAAGTTCCTAGAAGATGGGGATGAGGTCATCTTGACAGCTTGTTGCAAG                         GGTGAAGGCTACAATGTCGGATTCGGAACCTGCACTGGGAAGGTTCTGCCT
genomic: GCAAGTTCCTAGAAGATGGGGATGAGGTCATCTTGACAGCTTGTTGCAAGgtacagcaat ... gtttttacagGGTGAAGGCTACAATGTCGGATTCGGAACCTGCACTGGGAAGGTTCTGCCT
EST: gi|88509084|gb|CI436590.1|CI436590
EST:     GCAAGTTCCTAGAAGATGGGGATGAGGTCATCTTGACAGCTTGTTGCAAG                         GGTGAAGGCTACAATGTCGGATTCGGAACCTGCACTGGGAAGGTTCTGCCT
genomic: GCAAGTTCCTAGAAGATGGGGATGAGGTCATCTTGACAGCTTGTTGCAAGgtacagcaat ... gtttttacagGGTGAAGGCTACAATGTCGGATTCGGAACCTGCACTGGGAAGGTTCTGCCT
EST: gi|86250845|gb|CI007708.1|CI007708
EST:     GCAAGTTCCTAGAAGATGGGGATGAGGTCATCTTGACAGCTTGTTGCAAG                         GGTGAAGGCTACAATGTCGGATTCGGAACCTGCACTGGGAAGGTTCTGCCT
genomic: GCAAGTTCCTAGAAGATGGGGATGAGGTCATCTTGACAGCTTGTTGCAAGgtacagcaat ... gtttttacagGGTGAAGGCTACAATGTCGGATTCGGAACCTGCACTGGGAAGGTTCTGCCT
EST: gi|88907444|gb|CI090238.1|CI090238
EST:     GCAAGTTCCTAGAAGATGGGGATGAGGTCATCTTGACAGCTTGTTGCAAG                         GGTGAAGGCTACAATGTCGGATTCGGAACCTGCACTGGGAAGGTTCTGCCT
genomic: GCAAGTTCCTAGAAGATGGGGATGAGGTCATCTTGACAGCTTGTTGCAAGgtacagcaat ... gtttttacagGGTGAAGGCTACAATGTCGGATTCGGAACCTGCACTGGGAAGGTTCTGCCT
EST: gi|29672587|gb|CB668862.1|CB668862
EST:     GCAAGTTCCTAGAAGATGGGGATGAGGTCATCTTGACAGCTTGTTGCAAG                         GGTGAAGGCTACAATGTCGGATTCGGAACCTGCACTGGGAAGGTTCTGCCT
genomic: GCAAGTTCCTAGAAGATGGGGATGAGGTCATCTTGACAGCTTGTTGCAAGgtacagcaat ... gtttttacagGGTGAAGGCTACAATGTCGGATTCGGAACCTGCACTGGGAAGGTTCTGCCT
EST: gi|29612852|gb|CB617865.1|CB617865
EST:     GCAAGTTCCTAGAAGATGGGGATGAGGTCATCTTGACAGCTTGTTGCAAG                         GGTGAAGGCTACAATGTCGGATTTGGAACCTGCACTGGGAAGGTTCTGCCT
genomic: GCAAGTTCCTAGAAGATGGGGATGAGGTCATCTTGACAGCTTGTTGCAAGgtacagcaat ... gtttttacagGGTGAAGGCTACAATGTCGGATTCGGAACCTGCACTGGGAAGGTTCTGCCT
EST: gi|29657905|gb|CB654180.1|CB654180
EST:     GCAAGTTCCTAGAAGATGGGGATGAGGTCATCTTGACAGCTTGTTGCAAG                         GGTGAAGGCTACAATGTCGGATTCGGAACCTGCACTGGGAAGGTTCTGCCT
genomic: GCAAGTTCCTAGAAGATGGGGATGAGGTCATCTTGACAGCTTGTTGCAAGgtacagcaat ... gtttttacagGGTGAAGGCTACAATGTCGGATTCGGAACCTGCACTGGGAAGGTTCTGCCT
EST: gi|88522799|gb|CI450521.1|CI450521
EST:     CAAGTTCCTAGAAGATGGGGATGAGGTCATCTTGACAGGCTTTTTGCAAG                         GGTGAAGGCTACAATGTCGGATTCGGAACCTGCACTGGGAAGGTTCTGCCT
genomic: CAAGTTCCTAGAAGATGGGGATGAGGTCATCTTGACAG-CTTGTTGCAAGgtacagcaat ... gtttttacagGGTGAAGGCTACAATGTCGGATTCGGAACCTGCACTGGGAAGGTTCTGCCT
EST: gi|86853881|gb|CI329327.1|CI329327
EST:     GCAAGTTCCTAGAAGATGGGGATGAGGTCATCTTGACAGCTTGTTGCAAG                         GGTGAAGGCTACAATGTCGGATTCGGAACCTGCACTGGGAAGGTTCTGCCT
genomic: GCAAGTTCCTAGAAGATGGGGATGAGGTCATCTTGACAGCTTGTTGCAAGgtacagcaat ... gtttttacagGGTGAAGGCTACAATGTCGGATTCGGAACCTGCACTGGGAAGGTTCTGCCT
EST: gi|86599975|gb|CI258315.1|CI258315
EST:     GCAAGTTCCTAGAAGATGGGGATGAGGTCATCTTGACAGCTTGTTGCAAG                         GGTGAAGGCTACAATGTCGGATTCGGAACCTGCACTGGGAAGGTTCTGCCT
genomic: GCAAGTTCCTAGAAGATGGGGATGAGGTCATCTTGACAGCTTGTTGCAAGgtacagcaat ... gtttttacagGGTGAAGGCTACAATGTCGGATTCGGAACCTGCACTGGGAAGGTTCTGCCT
EST: gi|88554383|gb|CI484558.1|CI484558
EST:     GCAAGTTCCTAGAAGATGGGGATGAGGTCATCTTGACAGCTTGTTGCAAG                         GGTGAAGGCTACAATGTCGGATTCGGAACCTGCACTGGGAAGGTTCTGCCT
genomic: GCAAGTTCCTAGAAGATGGGGATGAGGTCATCTTGACAGCTTGTTGCAAGgtacagcaat ... gtttttacagGGTGAAGGCTACAATGTCGGATTCGGAACCTGCACTGGGAAGGTTCTGCCT
EST: gi|88968670|gb|CI098862.1|CI098862
EST:     CAAGTTCCTTAGAAGATGGGGATGAGGTCATCTTGACAGCTTGTTGCAAG                         GGTGAAGGCTACAATGTCGGATTCGGAACCTGCACTGGGAAGGTTCTGCCT
genomic: CAAGTTCC-TAGAAGATGGGGATGAGGTCATCTTGACAGCTTGTTGCAAGgtacagcaat ... gtttttacagGGTGAAGGCTACAATGTCGGATTCGGAACCTGCACTGGGAAGGTTCTGCCT
EST: gi|88288079|gb|CI512756.1|CI512756
EST:     GCAAGTTCCTAGAAGATGGGGATGAGGTCATCTTGACAGCTTGTTGCAAG                         GGTGAAGGCTACAATGTCGGATTCGGAACCTGCACTGGGAAGGTTCTGCCT
genomic: GCAAGTTCCTAGAAGATGGGGATGAGGTCATCTTGACAGCTTGTTGCAAGgtacagcaat ... gtttttacagGGTGAAGGCTACAATGTCGGATTCGGAACCTGCACTGGGAAGGTTCTGCCT
EST: gi|29671043|gb|CB667318.1|CB667318
EST:     GCAAGTTCCTAGAAGATGGGGATGAGGTCATCTTGACAGCTTGTTGCAAG                         GGTGAAGGCTACAATGTCGGATTCGGAACCTGCACTGGGAAGGTTTTGCCT
genomic: GCAAGTTCCTAGAAGATGGGGATGAGGTCATCTTGACAGCTTGTTGCAAGgtacagcaat ... gtttttacagGGTGAAGGCTACAATGTCGGATTCGGAACCTGCACTGGGAAGGTTCTGCCT
EST: gi|86428798|gb|CI075479.1|CI075479
EST:     GCAAGTTCCTAGAAGATGGGGATGAGGTCATCTTGACAGCTTGTTGCAAG                         GGTGAAGGCTACAATGTCGGATTCGGAACCTGCACTGGGAAGGTTCTGCCT
genomic: GCAAGTTCCTAGAAGATGGGGATGAGGTCATCTTGACAGCTTGTTGCAAGgtacagcaat ... gtttttacagGGTGAAGGCTACAATGTCGGATTCGGAACCTGCACTGGGAAGGTTCTGCCT
EST: gi|89163120|gb|CI100010.1|CI100010
EST:     GCAAGTTCCTAGAAGATGGGGATGAGGTCATCTTGACAGCTTGTTGCAAG                         GGTGAAGGCTACAATGTCGGATTCGGAACCTGCACTGGGAAGGTTCTGCCT
genomic: GCAAGTTCCTAGAAGATGGGGATGAGGTCATCTTGACAGCTTGTTGCAAGgtacagcaat ... gtttttacagGGTGAAGGCTACAATGTCGGATTCGGAACCTGCACTGGGAAGGTTCTGCCT
EST: gi|55409338|gb|CV721714.1|CV721714
EST:     GCAAGTTCCTAGAAGATGGGGATGAGGTCATCTTGACAGCTTGTTGCAAG                         GGTGAAGGCTACAATGTCGGATTCGGAACCTGCACTGGGAAGGTTCTGCCT
genomic: GCAAGTTCCTAGAAGATGGGGATGAGGTCATCTTGACAGCTTGTTGCAAGgtacagcaat ... gtttttacagGGTGAAGGCTACAATGTCGGATTCGGAACCTGCACTGGGAAGGTTCTGCCT
EST: gi|117232667|gb|CT861058.1|CT861058
EST:     GCAAGTTCCTAGAAGATGGGGATGAGGTCATCTTGACAGCTTGTTGCAAG                         GGTGAAGGCTACAATGTCGGATTTGGAACCTGCACTGGGAAGGTTCTGCCT
genomic: GCAAGTTCCTAGAAGATGGGGATGAGGTCATCTTGACAGCTTGTTGCAAGgtacagcaat ... gtttttacagGGTGAAGGCTACAATGTCGGATTCGGAACCTGCACTGGGAAGGTTCTGCCT
EST: gi|88459195|gb|CI514476.1|CI514476
EST:     GCAAGTTCCTAGAAGATGGGGATGAGGTCATCTTGACAGCTTGTTGCAAG                         GGTGAAGGCTACAATGTCGGATTCGGAACCTGCACTGGGAAGGTTCTGCCT
genomic: GCAAGTTCCTAGAAGATGGGGATGAGGTCATCTTGACAGCTTGTTGCAAGgtacagcaat ... gtttttacagGGTGAAGGCTACAATGTCGGATTCGGAACCTGCACTGGGAAGGTTCTGCCT
EST: gi|88527038|gb|CI455150.1|CI455150
EST:     GCAAGTTCCTAGAAGATGGGGATGAGGTCATCTTGACAGCTTGTTGCAAG                         GGTGAAGGGCTACAATGTCGGATTCGGAACCTGCACTGGGAAGGTTCTGCC
genomic: GCAAGTTCCTAGAAGATGGGGATGAGGTCATCTTGACAGCTTGTTGCAAGgtacagcaat ... gtttttacagGGTGAA-GGCTACAATGTCGGATTCGGAACCTGCACTGGGAAGGTTCTGCC
EST: gi|88462558|gb|CI517087.1|CI517087
EST:     GCAAGTTCCTAGAAGATGGGGATGAGGTCATCTTGACAGCTTGTTGCAAG                         GGTGAAGGCTACAATGTCGGATTCGGAACCTGCACTGGGAAGGTTCTGCCT
genomic: GCAAGTTCCTAGAAGATGGGGATGAGGTCATCTTGACAGCTTGTTGCAAGgtacagcaat ... gtttttacagGGTGAAGGCTACAATGTCGGATTCGGAACCTGCACTGGGAAGGTTCTGCCT
EST: gi|66947138|gb|AU311982.1|AU311982
EST:     GCAAGTTCCTAGAAGATGGGGATGAGGTCATCTTGACAGCTTGTTGCAAG                         GGTGAAGGCTACAATGTCGGATTCGGAACCTGCACTGGGAAGGTTCTGCCT
genomic: GCAAGTTCCTAGAAGATGGGGATGAGGTCATCTTGACAGCTTGTTGCAAGgtacagcaat ... gtttttacagGGTGAAGGCTACAATGTCGGATTCGGAACCTGCACTGGGAAGGTTCTGCCT
EST: gi|29637362|gb|CB642371.1|CB642371
EST:     GCAAGTTCCTAGAAGATGGGGATGAGGTCATCTTGACAGCTTGTTGCAAG                         GGTGAAGGCTACAATGTCGGATTCGGAACCTGCACTGGGAAGGTTCTGCCT
genomic: GCAAGTTCCTAGAAGATGGGGATGAGGTCATCTTGACAGCTTGTTGCAAGgtacagcaat ... gtttttacagGGTGAAGGCTACAATGTCGGATTCGGAACCTGCACTGGGAAGGTTCTGCCT
EST: gi|218783370|gb|GE329422.1|GE329422
EST:     GCAAGTTCCTAGAAGATGGGGATGAGGTCATCTTGACAGCTTGTTGCAAG                         GGTGAAGGCTACAATGTCGGATTCGGAACCTGCACTGGGAAGGTTCTGCCT
genomic: GCAAGTTCCTAGAAGATGGGGATGAGGTCATCTTGACAGCTTGTTGCAAGgtacagcaat ... gtttttacagGGTGAAGGCTACAATGTCGGATTCGGAACCTGCACTGGGAAGGTTCTGCCT
EST: gi|86839226|gb|CI331496.1|CI331496
EST:     CCAAGTTCCTAGAAGATGGGGATGAGGTCATCTTTACAGCTTGTTGCAAG                         GGTGAAGGCTACAATGTCGGATTCGGAACCTGCACTGGGAAGGTTCTGCCT
genomic: GCAAGTTCCTAGAAGATGGGGATGAGGTCATCTTGACAGCTTGTTGCAAGgtacagcaat ... gtttttacagGGTGAAGGCTACAATGTCGGATTCGGAACCTGCACTGGGAAGGTTCTGCCT
EST: gi|14981127|gb|BI305818.1|BI305818
EST:     GCAAGTTCCTAGAAGATGGGGATGAGGTCATCTTGACAGCTTGTTGCAAG                         GGTGAAGGCTACAATGTCGGATTCGGAACCTGCACTGGGAAGGTTCTGCCT
genomic: GCAAGTTCCTAGAAGATGGGGATGAGGTCATCTTGACAGCTTGTTGCAAGgtacagcaat ... gtttttacagGGTGAAGGCTACAATGTCGGATTCGGAACCTGCACTGGGAAGGTTCTGCCT
EST: gi|88266268|gb|CI377170.1|CI377170
EST:     GCAAGTTCCTAGAAGATGGGGATGAGGTCATCTTGACAGCTTGTTGCAAG                         GGTGAAGGCTACAATGTCGGATTCGGAACCTGCACTGGGAAGGTTCTGCCT
genomic: GCAAGTTCCTAGAAGATGGGGATGAGGTCATCTTGACAGCTTGTTGCAAGgtacagcaat ... gtttttacagGGTGAAGGCTACAATGTCGGATTCGGAACCTGCACTGGGAAGGTTCTGCCT
EST: gi|88420084|gb|CI513765.1|CI513765
EST:     GCAAGTTCCTAGAAGATGGGGATGAGGTCATCTTGACAGCTTGTTGCAAG                         GGTGAAGGCTACAATGTCGGATTCGGAACCTGCACTGGGAAGGTTCTGCCT
genomic: GCAAGTTCCTAGAAGATGGGGATGAGGTCATCTTGACAGCTTGTTGCAAGgtacagcaat ... gtttttacagGGTGAAGGCTACAATGTCGGATTCGGAACCTGCACTGGGAAGGTTCTGCCT
EST: gi|88904130|gb|CI006363.1|CI006363
EST:     GCAAGTTCCTAGAAGATGGGGATGAGGTCATCTTGACAGCTTGTTGCAAG                         GGTGAAGGCTACAATGTCGGATTCGGAACCTGCACTGGGAAGGTTCTGCCT
genomic: GCAAGTTCCTAGAAGATGGGGATGAGGTCATCTTGACAGCTTGTTGCAAGgtacagcaat ... gtttttacagGGTGAAGGCTACAATGTCGGATTCGGAACCTGCACTGGGAAGGTTCTGCCT
EST: gi|29672144|gb|CB668419.1|CB668419
EST:     GCAAGTTCCTAGAAGATGGGGATGAGGTCATCTTGACAGCTTGTTGCAAG                         GGTGAAGGCTACAATGTCGGATTCGGAACCTGCACTGGGAAGGTTCTGCCT
genomic: GCAAGTTCCTAGAAGATGGGGATGAGGTCATCTTGACAGCTTGTTGCAAGgtacagcaat ... gtttttacagGGTGAAGGCTACAATGTCGGATTCGGAACCTGCACTGGGAAGGTTCTGCCT
EST: gi|86877475|gb|CI312806.1|CI312806
EST:     GCAAGTTCCTAGAAGATGGGGATGAGGTCATCTTGACAGCTTGTTGCAAG                         GGTGAAGGCTACAATGTCGGATTCGGAACCTGCACT-GGAAGGTTCTGCCT
genomic: GCAAGTTCCTAGAAGATGGGGATGAGGTCATCTTGACAGCTTGTTGCAAGgtacagcaat ... gtttttacagGGTGAAGGCTACAATGTCGGATTCGGAACCTGCACTGGGAAGGTTCTGCCT
EST: gi|88905999|gb|CI089585.1|CI089585
EST:     GCAAGTTCCTAGAAGATGGGGATGAGGTCATCTTGACAGCTTGTTGCAAG                         GGTGAAGGCTACAATGTCGGATTCGGAACCTGCACTGGGAAGGTTCTGCCT
genomic: GCAAGTTCCTAGAAGATGGGGATGAGGTCATCTTGACAGCTTGTTGCAAGgtacagcaat ... gtttttacagGGTGAAGGCTACAATGTCGGATTCGGAACCTGCACTGGGAAGGTTCTGCCT
EST: gi|29636552|gb|CB641561.1|CB641561
EST:     GCAAGTTCCTAGAAGATGGGGATGAGGTCATCTTGACAGCTTGTTGCAAG                         GGTGAAGGCTACAATGTCGGATTCGGAACCTGCACTGGGAAGGTTCTGCCT
genomic: GCAAGTTCCTAGAAGATGGGGATGAGGTCATCTTGACAGCTTGTTGCAAGgtacagcaat ... gtttttacagGGTGAAGGCTACAATGTCGGATTCGGAACCTGCACTGGGAAGGTTCTGCCT
EST: gi|29636597|gb|CB641606.1|CB641606
EST:     GCAAGTTCCTAGAAGATGGGGATGAGGTCATCTTGACAGCTTGTTGCAAG                         GGTGAAGGCTACAATGTCGGATTCGGAACCTGCACTGGGAAGGTTCTGCCT
genomic: GCAAGTTCCTAGAAGATGGGGATGAGGTCATCTTGACAGCTTGTTGCAAGgtacagcaat ... gtttttacagGGTGAAGGCTACAATGTCGGATTCGGAACCTGCACTGGGAAGGTTCTGCCT
EST: gi|88420059|gb|CI513816.1|CI513816
EST:     GCAAGTTCCTAGAAGATGGGGATGAGGTCATCTTGACAGCTTGTTGCAAG                         GGTGAAGGCTACAATGTCGGATTCGGAACCTGCACTGGGAAGGTTCTGCCT
genomic: GCAAGTTCCTAGAAGATGGGGATGAGGTCATCTTGACAGCTTGTTGCAAGgtacagcaat ... gtttttacagGGTGAAGGCTACAATGTCGGATTCGGAACCTGCACTGGGAAGGTTCTGCCT
EST: gi|86840389|gb|CI342574.1|CI342574
EST:     GCAAGTTCCTAGAAGATGGGGATGAGGTCATCTTGACAGCTTGTTGCAAG                         GGTGAAGGCTACAATGTCGGATTCGGAACCTGCACTGGGAAGGTTCTGCCT
genomic: GCAAGTTCCTAGAAGATGGGGATGAGGTCATCTTGACAGCTTGTTGCAAGgtacagcaat ... gtttttacagGGTGAAGGCTACAATGTCGGATTCGGAACCTGCACTGGGAAGGTTCTGCCT
EST: gi|15008163|gb|AU222551.1|AU222551
EST:     GCAAGTTCCTAGAAGATGGGGATGAGGTCATCTTGACAGCTTGTTGCAAG                         GGTGAAGGCTACAATGTCGGATTCGGAACCTGCNCTGGGAAGGTTCTGCCT
genomic: GCAAGTTCCTAGAAGATGGGGATGAGGTCATCTTGACAGCTTGTTGCAAGgtacagcaat ... gtttttacagGGTGAAGGCTACAATGTCGGATTCGGAACCTGCACTGGGAAGGTTCTGCCT
EST: gi|86496229|gb|CI138862.1|CI138862
EST:     GCAAGTTCCTAGAAGATGGGGATGAGGTCATCTTGACAGCTTGTTGCAAG                         GGTGAAGGCTACAATGTCGGATTCGGAACCTGCACTGGGAAGGTTCTGCCT
genomic: GCAAGTTCCTAGAAGATGGGGATGAGGTCATCTTGACAGCTTGTTGCAAGgtacagcaat ... gtttttacagGGTGAAGGCTACAATGTCGGATTCGGAACCTGCACTGGGAAGGTTCTGCCT
EST: gi|29664840|gb|CB661115.1|CB661115
EST:     GCAAGTTCCTAGAAGATGGGGATGAGGTCATCTTGACAGCTTGTTGCAAG                         GGTGAAGGCTACAATGTCGGATTCGGAACCTGCACTGGGAAGGTTCTGCCT
genomic: GCAAGTTCCTAGAAGATGGGGATGAGGTCATCTTGACAGCTTGTTGCAAGgtacagcaat ... gtttttacagGGTGAAGGCTACAATGTCGGATTCGGAACCTGCACTGGGAAGGTTCTGCCT
EST: gi|88251258|gb|CI349686.1|CI349686
EST:     GCAAGTTCCTAGAAGATGGGGATGAGGTCATCTTGACAGCTTGTTGCAAG                         GGTGAAGGCTACAATGTCGGATTCGGAACCTGCACTGGGAAGGTTCTGCCT
genomic: GCAAGTTCCTAGAAGATGGGGATGAGGTCATCTTGACAGCTTGTTGCAAGgtacagcaat ... gtttttacagGGTGAAGGCTACAATGTCGGATTCGGAACCTGCACTGGGAAGGTTCTGCCT
EST: gi|88223961|gb|CI223810.1|CI223810
EST:     GCAAGTTCCTAGAAGATGGGGATGAGGTCATCTTGACAGCTTGTTGCAAG                         GGTGAAGGCTACAATGTCGGATTCGGAACCTGCACTGGGAAGGTTCTGCCT
genomic: GCAAGTTCCTAGAAGATGGGGATGAGGTCATCTTGACAGCTTGTTGCAAGgtacagcaat ... gtttttacagGGTGAAGGCTACAATGTCGGATTCGGAACCTGCACTGGGAAGGTTCTGCCT
EST: gi|88527431|gb|CI455590.1|CI455590
EST:     CAAGTTCCTAGAAGATGGGGATGAGGTCATCTTGACAGGCTTGTTGCAAG                         GGTGAAGGCTACAATGTCGGATTCGGAACCTGCACTGGGAAGGTTCTGCCT
genomic: CAAGTTCCTAGAAGATGGGGATGAGGTCATCTTGACA-GCTTGTTGCAAGgtacagcaat ... gtttttacagGGTGAAGGCTACAATGTCGGATTCGGAACCTGCACTGGGAAGGTTCTGCCT
EST: gi|86433902|gb|CI094245.1|CI094245
EST:     GCAAGTTCCTAGAAGATGGGGATGAGGTCATCTTGACAGCTTGTTGCAAG                         GGTGAAGGCTACAATGTCGGATTCGGAACCTGCACTGGGAAGGTTCTGCCT
genomic: GCAAGTTCCTAGAAGATGGGGATGAGGTCATCTTGACAGCTTGTTGCAAGgtacagcaat ... gtttttacagGGTGAAGGCTACAATGTCGGATTCGGAACCTGCACTGGGAAGGTTCTGCCT
EST: gi|88259120|gb|CI363413.1|CI363413
EST:     GCAAGTTCCTAGAAGATGGGGATGAGGTCATCTTGACAGCTTGTTGCAAG                         GGTGAAGGCTACAATGTCGGATTCGGAACCTGCACTGGGAAGGTTCTGCCT
genomic: GCAAGTTCCTAGAAGATGGGGATGAGGTCATCTTGACAGCTTGTTGCAAGgtacagcaat ... gtttttacagGGTGAAGGCTACAATGTCGGATTCGGAACCTGCACTGGGAAGGTTCTGCCT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 55 (upstream exon), 63 (downstream exon)
Score: 7

GGAGCTAACATGGAATGGGCAGAAGGAGATATCAGTTGGAAACTCGACCCGCAAGTTCCTAGAAGATGGGGATGAGGTCATCTTGACAGCTTGTTGCAAGgtacagcaat ... gtttttacagGGTGAAGGCTACAATGTCGGATTCGGAACCTGCACTGGGAAGGTTCTGCCTGCACTTCCATGATCCAACATATAGAGGATAGCCTGCTTTCATCTCATCA




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGAGCTAACATGGAATGGGCAGAAGGAGATATCAGTTGGAAACTCGACCCGCAAGTTCCTAGAAGATGGGGATGAGGTCATCTTGACAGCTTGTTGCAAGgtacagcaatctcataagtcttgatcaaaccaaatttagagctcttttcgtctaaaacaaatatctttgaagattccatgctctatcttgatgccatccatctacatgtttttacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG