1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
AAACACTGCATGATGTACTACATGAAGGGGAGGAATTGGATGGTGCACTATCATGGAATGCTCGCCTCCAAGTTGCTCTTGGTGCAGCAAAGGCCTTAGAgtaagttaccaagctgtatcgcggttcaatataattaccatgaacttgtgcttatttaatttagtttttcatggggtagcttttgtacttatattcttctttcag
species | Oryza sativa |
transcript | LOC_Os02g07960.2 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: TCATGGAATGCTCGCCTCCAAGTTGCTCTTGGTGCAGCAAAGGCCTTAGA CTATCTACATGAGAGCTGTGAACCTCCAGTAGTGCACCAGAATTTTGAGCCEST: gi|29656568|gb|CB652843.1|CB652843
genomic: TCATGGAATGCTCGCCTCCAAGTTGCTCTTGGTGCAGCAAAGGCCTTAGAgtaagttacc ... cttctttcagCTATCTACATGAGAGCTGTGAACCTCCAGTAGTGCACCAGAATTTTGAGCC
EST: TCATGGAATGCTCGCCTCCAAGTTGCTCTTGGTGCAGCAAAGGCCTTAGA CTATCTACATGAGAGCTGTGAACCTCCAGTAGTGCACCAGAATTTTGAGCCEST: gi|58611356|gb|CK039068.1|CK039068
genomic: TCATGGAATGCTCGCCTCCAAGTTGCTCTTGGTGCAGCAAAGGCCTTAGAgtaagttacc ... cttctttcagCTATCTACATGAGAGCTGTGAACCTCCAGTAGTGCACCAGAATTTTGAGCC
EST: CATGGAATGCTCGCCTCCAAGTTGCTCTTGTGTGCAGCAAAGGCGTNA-A CTATCTACATGAGAGCTGTGAACCTCCAGTAGTGCACCAGAATTTTGAGCCEST: gi|29674397|gb|CB670672.1|CB670672
genomic: CATGGAATGCTCGCCTCCAAGTTGCTCTTG-GTGCAGCAAAGGCCTTAGAgtaagttacc ... cttctttcagCTATCTACATGAGAGCTGTGAACCTCCAGTAGTGCACCAGAATTTTGAGCC
EST: AAGGCCTTAGA CTATCTACATGAGAGCTGTGAACCTCCAGTAGTGCACCAGAATTTTGAGCCEST: gi|29671438|gb|CB667713.1|CB667713
genomic: AAGGCCTTAGAgtaagttacc ... cttctttcagCTATCTACATGAGAGCTGTGAACCTCCAGTAGTGCACCAGAATTTTGAGCC
EST: TCATGGAATGCTCGCCTCCAAGTTGCTCTTGGTGCAGCAAAGGCCTTAGA CTATCTACATGAGAGCTGTGAACCTCCAGTAGTGCACCAGAATTTTGAGCCEST: gi|8860079|gb|AU097397.1|AU097397
genomic: TCATGGAATGCTCGCCTCCAAGTTGCTCTTGGTGCAGCAAAGGCCTTAGAgtaagttacc ... cttctttcagCTATCTACATGAGAGCTGTGAACCTCCAGTAGTGCACCAGAATTTTGAGCC
EST: TCATGGAATGCTCGCCTCCAAGTTGCTCTTGGTGCAGCAAAGGCCTTAGA CTATCTACATGAGAGCTGTGA
genomic: TCATGGAATGCTCGCCTCCAAGTTGCTCTTGGTGCAGCAAAGGCCTTAGAgtaagttacc ... cttctttcagCTATCTACATGAGAGCTGTGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAACACTGCATGATGTACTACATGAAGGGGAGGAATTGGATGGTGCACTATCATGGAATGCTCGCCTCCAAGTTGCTCTTGGTGCAGCAAAGGCCTTAGAgtaagttaccaagctgtatcgcggttcaatataattaccatgaacttgtgcttatttaatttagtttttcatggggtagcttttgtacttatattcttctttcag
- - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG