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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCCACGTTTGGTGATGGTCTCCAAAGGGAACTGCCGGCATGCCTTCCCGTTCTTGTTGATAGAATGGGTAATGAAATAACTAGACTTACAGCAGTTAAGgtaagctaccgactgcacctttactgacagatagcattgctaatctccttattgattcattacttatgagcactacttgttttctttaacacaattatgt...

Basic information

species Oryza sativa
transcript LOC_Os02g07340.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g07340.1 (Oryza sativa), 5'ss of exon 13
lower sequence: GRMZM2G168629_T01 (Zea mays), 5'ss of exon 17
ATCCACGTTTGGTGATGGTCTCCAAAGGGAACTGCCGGCATGCCTTCCCGTTCTTGTTGATAGAATGGGTAATGAAATAACTAGACTTACAGCAGTTAAGgtaagctaccgactgc--acctttactgacag-atagcattgctaatctccttattgattcattacttatgagcactacttgttttctttaaca-caattatgt
 || || ||||||||||||||  |||| ||| | || |||||||||||| | || ||||| || |||||||||||||| || ||||||||||| || |||||||| |   ||||||   | |||  |  ||  |    ||||    | |    || | | |||| ||| |       |  | |  | || || | ||| |    
CTCTACTTTTGGTGATGGTCTTGAAAGAGAATTACCAGCATGCCTTCCCATACTCGTTGACAGGATGGGTAATGAAATTACAAGACTTACAGCTGTCAAGgtaagtttttgactgcttgcgtttgataccaatacttaattggaggttttaacatcg-tgcattgcttgtttatggcatatttaatattaaagaacaaatg---

upper sequence: LOC_Os02g07340.1 (Oryza sativa), 5'ss of exon 13
lower sequence: GLYMA07G40230.2 (Glycine max), 5'ss of exon 18
ATCCACGTTTGGTGATGGTCTCCAAAGGGAACTGCCGGCATGCCTTCCCGTTCTTGTTGATAGAATGGGTAATGAAATAACTAGACTTACAGCAGTTAAGgtaagctaccgactgcacctttactgacagatagcattgctaatctcctta-ttgattcattacttatgagcactacttgttttctt--taacacaattatgt
 || || ||||| |||  |||  |    ||| | || ||||||||||| || ||||||||| ||||||| ||||| |||||  ||||||| || || |||||  | |    | |  |  |      |   | |  || |  | | || | | ||  ||   | ||    |    |     ||||  |  || ||||| |    
GTCAACATTTGGCGATCATCTTAATGCAGAATTACCTGCATGCCTTCCTGTGCTTGTTGATCGAATGGGAAATGAGATAACCCGACTTACTGCTGTCAAGgttggttggttagttgaattccgtgcattaagattataggaattgtcttgacttcttttgattctgtctaattttgagaattttgctcatatcacaaatc---