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TGTAACTTATGCTAAAAGCACACATGGACCGGTATCAGGGGCTTCACAGTCAAACAGCCTTGCTGCAGCTGCCATTGAGGCTGCATCATTTTCTCAGCAGgtcagttgtagcccctacttgtaatttgtcaccatgtgcacaggaaagtaaacagtgcattgaagaaaatgagaactgctgttatgtaactccattaaat...
species | Oryza sativa |
transcript | LOC_Os02g07070.1 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: CAAACAGCCTTGCTGCAGCTGCCATTGAGGCTGCATCATTTTCTCAGCAG TATGATGCTATAGGTTGGGCCCCAAAAGAGTACAATCCTGATGACAAACTGEST: gi|58656329|gb|CK045009.1|CK045009
genomic: CAAACAGCCTTGCTGCAGCTGCCATTGAGGCTGCATCATTTTCTCAGCAGgtcagttgta ... tttggaccagTATGATGCTATAGGTTGGGCCCCAAAAGAGTACAATCCTGATGACAAACTG
EST: CAAACAGCCTTGCTGCAGCTGCCATTGAGGCTGCATCATTTTCTCAGCAG TATGATGCTATAGGTTGGGCCCCAAAAGAGTACAATCCTGATGACAAACTGEST: gi|58611340|gb|CK039052.1|CK039052
genomic: CAAACAGCCTTGCTGCAGCTGCCATTGAGGCTGCATCATTTTCTCAGCAGgtcagttgta ... tttggaccagTATGATGCTATAGGTTGGGCCCCAAAAGAGTACAATCCTGATGACAAACTG
EST: CAAACAGCCTTGCTGCAGCTGCCATTGAGGCTGCATCATTTTCTCAGCAG TATGATGCTATAEST: gi|29629290|gb|CB634301.1|CB634301
genomic: CAAACAGCCTTGCTGCAGCTGCCATTGAGGCTGCATCATTTTCTCAGCAGgtcagttgta ... tttggaccagTATGATGCTATA
EST: CAAACAGCCTTGCTGCAGCTGCCATTGAGGCTGCATCATTTTCTCAGCAG TATGATGCTATAGGTTGGGCCCCAAAAGAGTACAATCCTGATGACAAACTGEST: gi|11564749|gb|AU165385.1|AU165385
genomic: CAAACAGCCTTGCTGCAGCTGCCATTGAGGCTGCATCATTTTCTCAGCAGgtcagttgta ... tttggaccagTATGATGCTATAGGTTGGGCCCCAAAAGAGTACAATCCTGATGACAAACTG
EST: CAAACAGCCTTGCTGCAGCTGCCATTGAGGCTGCATCATTTTCTCAGCAG TATGATGCTATAGGTTGGGCCCCAAAAGAGTACAATCCTGATGACAAACTGEST: gi|2443170|gb|C74941.1|C74941
genomic: CAAACAGCCTTGCTGCAGCTGCCATTGAGGCTGCATCATTTTCTCAGCAGgtcagttgta ... tttggaccagTATGATGCTATAGGTTGGGCCCCAAAAGAGTACAATCCTGATGACAAACTG
EST: CAAACAGCCTTGCTGCAGCTGCCATTGAGGCTGCATCATTTTCTCAGCAG TATGATGCTATAGGTTGGGCCCCAAAAGAGTACAATCCTGATGACAAACTGEST: gi|86539574|gb|CI179780.1|CI179780
genomic: CAAACAGCCTTGCTGCAGCTGCCATTGAGGCTGCATCATTTTCTCAGCAGgtcagttgta ... tttggaccagTATGATGCTATAGGTTGGGCCCCAAAAGAGTACAATCCTGATGACAAACTG
EST: ACAGCCCTGCTGCAGCTGCCACTTGAGGCNTGCATCATTTTCTCAGCTAG TATGATGCTATAGGTNTGGGCCCCAAAAGAGTACAATCCTGATGACAAAC
genomic: ACAGCCTTGCTGCAGCTGCCA-TTGAGGC-TGCATCATTTTCTCAGC-AGgtcagttgta ... tttggaccagTATGATGCTATAGGT-TGGGCCCCAAAAGAGTACAATCCTGATGACAAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTAACTTATGCTAAAAGCACACATGGACCGGTATCAGGGGCTTCACAGTCAAACAGCCTTGCTGCAGCTGCCATTGAGGCTGCATCATTTTCTCAGCAGgtcagttgtagcccctacttgtaatttgtcaccatgtgcacaggaaagtaaacagtgcattgaagaaaatgagaactgctgttatgtaactccattaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cccctac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagaaaa