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TGGTTCATTTGCAGTATTCGTGTAGTCACTGTTGTACCCTTATGGTGTCTGGAAAACGTTGGGTTTGCCATCAATGCAGAAGCTTTTACATATGCGACAAgtaagttattttctttaacaatattacacacgtgttattgatctatatgaggccacagtctgaagacatctgtgacatgccaaacaaatctataccagta...
species | Oryza sativa |
transcript | LOC_Os02g04490.1 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: GGAAAACGTTGGGTTTGCCATCAATGCAGAAGCTTTTACATATGCGACAA GTGTTACGATGCAGAACAACAGCTTGAAGATAGGGAGAGGCACCCAAGTAAEST: gi|112785444|gb|EE590704.1|EE590704
genomic: GGAAAACGTTGGGTTTGCCATCAATGCAGAAGCTTTTACATATGCGACAAgtaagttatt ... tttgtttcagGTGTTACGATGCAGAACAACAGCTTGAAGATAGGGAGAGGCACCCAAGTAA
EST: GGAAAACGTTGGGTTTGCCATCAATGCAGAAGCTTTTACATATGCGACAA GTGTTACGATGCAGAACAACAGCTTGAAGATAGGGAGAGGCACCCAAGTAAEST: gi|58694207|gb|CK082894.1|CK082894
genomic: GGAAAACGTTGGGTTTGCCATCAATGCAGAAGCTTTTACATATGCGACAAgtaagttatt ... tttgtttcagGTGTTACGATGCAGAACAACAGCTTGAAGATAGGGAGAGGCACCCAAGTAA
EST: GGAAAACG-TGGGGTTGCCATCAATGCAGAAGCTTTTACATATGCGACAA GTGTTACGATGCAGAACAACAGCTTGAAGATAGGGAGAGGCACCCAAGTAAEST: gi|58603487|gb|CK014015.1|CK014015
genomic: GGAAAACGTTGGGTTTGCCATCAATGCAGAAGCTTTTACATATGCGACAAgtaagttatt ... tttgtttcagGTGTTACGATGCAGAACAACAGCTTGAAGATAGGGAGAGGCACCCAAGTAA
EST: GGAAAACGTTGGGTTTGCCATCAATGCAGAAGCTTTTACATATGCGACAA GTGTTACGATGCAGAACAACAGCTTGAAGATAGGGAGAGGCACCCAAGTAAEST: gi|58673803|gb|CK062489.1|CK062489
genomic: GGAAAACGTTGGGTTTGCCATCAATGCAGAAGCTTTTACATATGCGACAAgtaagttatt ... tttgtttcagGTGTTACGATGCAGAACAACAGCTTGAAGATAGGGAGAGGCACCCAAGTAA
EST: GGAAAACGTTGGGTTTGCCATCAATGCAGAAGCTTTTACATATGCGACAA GTGTTACGATGCAGAACAACAGCTTGAAGATAGGGAGAGGCACCCAAGTAA
genomic: GGAAAACGTTGGGTTTGCCATCAATGCAGAAGCTTTTACATATGCGACAAgtaagttatt ... tttgtttcagGTGTTACGATGCAGAACAACAGCTTGAAGATAGGGAGAGGCACCCAAGTAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGTTCATTTGCAGTATTCGTGTAGTCACTGTTGTACCCTTATGGTGTCTGGAAAACGTTGGGTTTGCCATCAATGCAGAAGCTTTTACATATGCGACAAgtaagttattttctttaacaatattacacacgtgttattgatctatatgaggccacagtctgaagacatctgtgacatgccaaacaaatctataccagta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaacaaa