1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
CGCTGACAATTTAAGGGCAGAAAACTCCTCTCTTAGGGCTGAGCTTGAACGGATCAAAAAGGAGTACGAGGCACTTCTTTCACACAATGCTTCACTCAAGgtggctgagctcatgcatttcctgagtatttaatttcttcgtgtttacttgccctttatcatctttctgtgttggctccatgaaaaatgttttgcagcta...
species | Oryza sativa |
transcript | LOC_Os02g03580.1 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: GGATCAAAAAGGAGTACGAGGCACTTCTTTCACACAATGCTTCACTCAAG GAAAAACTAGAGGGGAACAGTGATTCAATACCTTATATGAATGAACAGAACEST: gi|88903327|gb|CI088865.1|CI088865
genomic: GGATCAAAAAGGAGTACGAGGCACTTCTTTCACACAATGCTTCACTCAAGgtggctgagc ... atatttgcagGAAAAACTAGAGGGGAACAGTGATTCAATACCTTATATGAATGAACAGAAC
EST: GGATCAAAAAGGAGTACGAGGCACTTCTTTCACACAATGCTTCACTCAAG GAAAAACTAGAGGGGAACAGTGATTCAATACCTTATATGAATGAACAGAACEST: gi|86497997|gb|CI140630.1|CI140630
genomic: GGATCAAAAAGGAGTACGAGGCACTTCTTTCACACAATGCTTCACTCAAGgtggctgagc ... atatttgcagGAAAAACTAGAGGGGAACAGTGATTCAATACCTTATATGAATGAACAGAAC
EST: GGATCAAAAAGGAGTACGAGGCACTTCTTTCACACAATGCTTCACTCAAG GAAAAACTAGAGGGGAACAGTGATTCAATACCTTATATGAATGAACAGAACEST: gi|86505811|gb|CI148444.1|CI148444
genomic: GGATCAAAAAGGAGTACGAGGCACTTCTTTCACACAATGCTTCACTCAAGgtggctgagc ... atatttgcagGAAAAACTAGAGGGGAACAGTGATTCAATACCTTATATGAATGAACAGAAC
EST: GGATCAAAAAGGAGTACGAGGCACTTCTTTCACACAATGCTTCACTCAAG GAAAAACTAGAGGGGAACAGTGATTCAATACCTTATATGAATGAACAGAACEST: gi|88850496|gb|CI093177.1|CI093177
genomic: GGATCAAAAAGGAGTACGAGGCACTTCTTTCACACAATGCTTCACTCAAGgtggctgagc ... atatttgcagGAAAAACTAGAGGGGAACAGTGATTCAATACCTTATATGAATGAACAGAAC
EST: GGATCAAAAAGGAGTACGAGGCACTTCTTTCACACAATGCTTCACTCAAG GAAAAACTAGAGGGGAACAGTGATTCAATACCTTATATGAATGAACAGAACEST: gi|86879457|gb|CI327145.1|CI327145
genomic: GGATCAAAAAGGAGTACGAGGCACTTCTTTCACACAATGCTTCACTCAAGgtggctgagc ... atatttgcagGAAAAACTAGAGGGGAACAGTGATTCAATACCTTATATGAATGAACAGAAC
EST: GGATCAAAAAGGAGTACGAGGCACTTCTTTCACACAATGCTTCACTCAAG GAAAAACTAGAGGGGAACAGTGATTCAATACCTTATATGAATGAACAGAACEST: gi|29670501|gb|CB666776.1|CB666776
genomic: GGATCAAAAAGGAGTACGAGGCACTTCTTTCACACAATGCTTCACTCAAGgtggctgagc ... atatttgcagGAAAAACTAGAGGGGAACAGTGATTCAATACCTTATATGAATGAACAGAAC
EST: GGATCAAAAAGGAGTACGAGGCACTTCTTTCACACAATGCTTCACTCAAG GAAAAACTAGAGGGGAACAGTGATTCAATACCTTATATGAATGAACAGAACEST: gi|88829448|gb|CI074318.1|CI074318
genomic: GGATCAAAAAGGAGTACGAGGCACTTCTTTCACACAATGCTTCACTCAAGgtggctgagc ... atatttgcagGAAAAACTAGAGGGGAACAGTGATTCAATACCTTATATGAATGAACAGAAC
EST: GGATCAAAAAGGAGTACGAGGCACTTCTTTCACACAATGCTTCACTCAAG G-AAAACTAGAGGGGAACAGTGATTCAATACCTTATATGAATGAACAGAACEST: gi|88965389|gb|CI011640.1|CI011640
genomic: GGATCAAAAAGGAGTACGAGGCACTTCTTTCACACAATGCTTCACTCAAGgtggctgagc ... atatttgcagGAAAAACTAGAGGGGAACAGTGATTCAATACCTTATATGAATGAACAGAAC
EST: GGATCAAAAAGGAGTACGAGGCACTTCTTTCACACAATGCTTCACTCAAG GAAAAACTAGAGGGGAACAGTGATTCAATACCTTATATGAATGAACAGAACEST: gi|29665043|gb|CB661318.1|CB661318
genomic: GGATCAAAAAGGAGTACGAGGCACTTCTTTCACACAATGCTTCACTCAAGgtggctgagc ... atatttgcagGAAAAACTAGAGGGGAACAGTGATTCAATACCTTATATGAATGAACAGAAC
EST: GGATCAAAAAGGAGTACGAGGCACTTCTTTCACACAATGCTTCACTCAAG GAAAAACTAGAGGGGAACAGTGATTCAATACCTTATATGAATGAACAGAACEST: gi|88517412|gb|CI445066.1|CI445066
genomic: GGATCAAAAAGGAGTACGAGGCACTTCTTTCACACAATGCTTCACTCAAGgtggctgagc ... atatttgcagGAAAAACTAGAGGGGAACAGTGATTCAATACCTTATATGAATGAACAGAAC
EST: GGATCAAAAAGGAGTACGAGGCACTTCTTTCACACAATGCTTCACTCAAG GGAAAACTAGAGGGGAACAGTGATTCAATACCTTATATGAATGAACAGAACEST: gi|86488210|gb|CI130843.1|CI130843
genomic: GGATCAAAAAGGAGTACGAGGCACTTCTTTCACACAATGCTTCACTCAAGgtggctgagc ... atatttgcagGAAAAACTAGAGGGGAACAGTGATTCAATACCTTATATGAATGAACAGAAC
EST: GGATCAAAAAGGAGTACGAGGCACTTCTTTCACACAATGCTTCACTCAAG GAAAAACTAGAGGGGAACAGTGATTCAATACCTTATATGAATGAACAGAACEST: gi|88446664|gb|CI526497.1|CI526497
genomic: GGATCAAAAAGGAGTACGAGGCACTTCTTTCACACAATGCTTCACTCAAGgtggctgagc ... atatttgcagGAAAAACTAGAGGGGAACAGTGATTCAATACCTTATATGAATGAACAGAAC
EST: GGATCAAAAAGGAGTACGAGGCACTTCTTTCACACAATGCTTCACTCAAG GAAAAACTAGAGGGGAACAGTGATTCAATACCTTATATGAATGAACAGAACEST: gi|86252236|gb|CI055973.1|CI055973
genomic: GGATCAAAAAGGAGTACGAGGCACTTCTTTCACACAATGCTTCACTCAAGgtggctgagc ... atatttgcagGAAAAACTAGAGGGGAACAGTGATTCAATACCTTATATGAATGAACAGAAC
EST: GGATCAAAAAGGAGTACGAGGCACTTCTTTCACACAATGCTTCACTCAAG GAAAAACTAGAGGGGAACAGTGATTCAATACCTTATATGAATGAACAGAACEST: gi|88958454|gb|CI095970.1|CI095970
genomic: GGATCAAAAAGGAGTACGAGGCACTTCTTTCACACAATGCTTCACTCAAGgtggctgagc ... atatttgcagGAAAAACTAGAGGGGAACAGTGATTCAATACCTTATATGAATGAACAGAAC
EST: GGATCAAAAAGGAGTACGAGGCACTTCTTTCACACAATGCTTCACTCAAG GAAAAACTAGAGGGGAACAGTGATTCAATACCTTATATGAATGAACAGAACEST: gi|89172965|gb|CI040858.1|CI040858
genomic: GGATCAAAAAGGAGTACGAGGCACTTCTTTCACACAATGCTTCACTCAAGgtggctgagc ... atatttgcagGAAAAACTAGAGGGGAACAGTGATTCAATACCTTATATGAATGAACAGAAC
EST: GGATCAAAAAGGAGTACGAGGCACTTCTTTCACACAATGCTTCACTCAAG GAAAAACTAGAGGGGAACAGTGATTCAATACCTTATATGAATGAACAGAAC
genomic: GGATCAAAAAGGAGTACGAGGCACTTCTTTCACACAATGCTTCACTCAAGgtggctgagc ... atatttgcagGAAAAACTAGAGGGGAACAGTGATTCAATACCTTATATGAATGAACAGAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGCTGACAATTTAAGGGCAGAAAACTCCTCTCTTAGGGCTGAGCTTGAACGGATCAAAAAGGAGTACGAGGCACTTCTTTCACACAATGCTTCACTCAAGgtggctgagctcatgcatttcctgagtatttaatttcttcgtgtttacttgccctttatcatctttctgtgttggctccatgaaaaatgttttgcagcta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG