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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCTGTTCTGCTGGATAACCCAGGATTTTGAGTTGTACGCCGCTTTTAATCCACTGGCTGACAAGgtttgtacctgtcacaatcagtttatgtatgctcacttgtgttttgtttgttgtggtaaatgctgtggtagtctaggcaccaggggaatggattaaggtaccatattcttggttgtatagcaactcaataattttgagcatacttattttgcag

Basic information

species Oryza sativa
transcript LOC_Os01g74460.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g74460.1 (Oryza sativa), 5'ss of exon 13
lower sequence: GRMZM2G179732_T03 (Zea mays), 5'ss of exon 5
TTCTGTTCTGCTGGATAACCCAGGATTTTGAGTTGTACGCCGCTTTTAATCCACTGGCTGACAAGgtttgtacctgtcacaatcagtttatgtatgctcacttgtgttttgtttgttgtggtaaatgctgtggtagtctaggcaccaggggaatggattaaggtaccatattcttggttgtatagcaactcaataattttgagcatacttattttgcag
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TTCTATTTTGCTGGATAACCCAGGATTTCGAACTATATGCAGCCTTTAATCCACTGGCTGATAAGgtcagtgcatgt-acatgcagttgttgatgttttttttgtatggatcatatcacaacaca-gccgcagtcatctttgtat----------aatgcagttatcatgattgtatagggataatagtc---taacttggattgtacttgttt-gcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29665848|gb|CB662123.1|CB662123
EST:     TAACCCAGGATTTTGAGTTGTACGCCGCTTTTAATCCACTGGCTGACAAG                         AGTCAAGCAATCAAGGTATGCAATAGAGTATGCCAATGGATCAGGGACCTG
genomic: TAACCCAGGATTTTGAGTTGTACGCCGCTTTTAATCCACTGGCTGACAAGgtttgtacct ... tattttgcagAGTCAAGCAATCAAGGTATGCAATAGAGTATGCCAATGGATCAGGGACCTG
EST: gi|88503388|gb|CI430894.1|CI430894
EST:     TACGCCGCTTTTAATCCACTGGCTGACAAG                         AGTCAAGCAATCAAGGTATGCAATAGAGTATGCCAATGGATCAGGGACCTG
genomic: TACGCCGCTTTTAATCCACTGGCTGACAAGgtttgtacct ... tattttgcagAGTCAAGCAATCAAGGTATGCAATAGAGTATGCCAATGGATCAGGGACCTG
EST: gi|86486002|gb|CI128635.1|CI128635
EST:     TAACCCAGGATTTTGAGTTGTACGCCGCTCTTAATCCGCTGGCTGACAAG                         AGTCAAGCCATCAAGGTATNCAATAGAGTATGCCAATGGATCAGGGACCTG
genomic: TAACCCAGGATTTTGAGTTGTACGCCGCTTTTAATCCACTGGCTGACAAGgtttgtacct ... tattttgcagAGTCAAGCAATCAAGGTATGCAATAGAGTATGCCAATGGATCAGGGACCTG
EST: gi|87029236|gb|CI276504.1|CI276504
EST:     TAACCCAGGATTTTGAGTTGTACGCCGCTTTTAATCCACTGGCTGACAAG                         AGTCAAGCAATCAAGGTATGCAATAGAGTATGCCAATGGATCAGGGACCTG
genomic: TAACCCAGGATTTTGAGTTGTACGCCGCTTTTAATCCACTGGCTGACAAGgtttgtacct ... tattttgcagAGTCAAGCAATCAAGGTATGCAATAGAGTATGCCAATGGATCAGGGACCTG
EST: gi|88997559|gb|CI390225.1|CI390225
EST:     TAACCCAGGATTTTGAGTTGTACGCCGCTTTTAATCCACTGGCTGACAAG                         AGTCAAGCAATCAAGGTATGCAATAGAGTATGCCAATGGATCAGGGACCTG
genomic: TAACCCAGGATTTTGAGTTGTACGCCGCTTTTAATCCACTGGCTGACAAGgtttgtacct ... tattttgcagAGTCAAGCAATCAAGGTATGCAATAGAGTATGCCAATGGATCAGGGACCTG
EST: gi|86861206|gb|CI326645.1|CI326645
EST:     TAACCCAGGATTTTGAGTTGTACCCCGCTTTTAATCCACTGGCTGACAAG                         AGTCAAGCAATCAAGGTATGCAATAGAGTATGCCAATGGATCAGGGACCTG
genomic: TAACCCAGGATTTTGAGTTGTACGCCGCTTTTAATCCACTGGCTGACAAGgtttgtacct ... tattttgcagAGTCAAGCAATCAAGGTATGCAATAGAGTATGCCAATGGATCAGGGACCTG