1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
GTCATTGGACAATAACAATTTGGATGGTTCTGTTCCATCAGATGTCTGGCGGAATATTGATTTCAGTGGAAATAGAAGTCTTATATTgtaagaccatgcataatctaccgttcttttcactttctctggaattagttaattgataatctaattctctgtcaatattttgtag
species | Oryza sativa |
transcript | LOC_Os01g72990.1 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: TCAGATGTCTGGCGGAATATTGATTTCAGTGGAAATAGAAGTCTTATATT GGATTTCCAGAACAATTCTCTAACCAATCTATCAAATCCTCTTTCACCACCEST: gi|38472349|gb|CF956480.1|CF956480
genomic: TCAGATGTCTGGCGGAATATTGATTTCAGTGGAAATAGAAGTCTTATATTgtaagaccat ... tattttgtagGGATTTCCAGAACAATTCTCTAACCAATCTATCAAATCCTCTTTCACCACC
EST: TCAGATGTCTGGCGGAATATTGATTTCAGTGGAAATAGAAGTCTTATATT GGATTTCCAGAACAATTCTCTAACCAATCTATCAAATCCTCTTTCACCACCEST: gi|88431097|gb|CI574268.1|CI574268
genomic: TCAGATGTCTGGCGGAATATTGATTTCAGTGGAAATAGAAGTCTTATATTgtaagaccat ... tattttgtagGGATTTCCAGAACAATTCTCTAACCAATCTATCAAATCCTCTTTCACCACC
EST: TCAGATGTCTGGCGGAATATTGATTTCAGTGGAAATAGAAGTCTTATATT GGATTTCCAGAACAATTCTCTAACCAATCTATCAAATCCTCTTTCACCACCEST: gi|29627356|gb|CB632367.1|CB632367
genomic: TCAGATGTCTGGCGGAATATTGATTTCAGTGGAAATAGAAGTCTTATATTgtaagaccat ... tattttgtagGGATTTCCAGAACAATTCTCTAACCAATCTATCAAATCCTCTTTCACCACC
EST: TCAGATGTCTGGCGGAATATTGATTTCAGTGGAAATAGAAGTCTTATATT GGATTTCCAGAACAATTCTCTAACCAATCTATCAAATCCTCTTTCACCGCCEST: gi|29623335|gb|CB628346.1|CB628346
genomic: TCAGATGTCTGGCGGAATATTGATTTCAGTGGAAATAGAAGTCTTATATTgtaagaccat ... tattttgtagGGATTTCCAGAACAATTCTCTAACCAATCTATCAAATCCTCTTTCACCACC
EST: TCAGATGTCTGGCGGAATATTGATTTCAGTGGAAATAGAAGTCTTATATT GGATTTCCAGAACAATTCTCTAACCAATCTATCAAATCCTCTTTCACCGCC
genomic: TCAGATGTCTGGCGGAATATTGATTTCAGTGGAAATAGAAGTCTTATATTgtaagaccat ... tattttgtagGGATTTCCAGAACAATTCTCTAACCAATCTATCAAATCCTCTTTCACCACC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCATTGGACAATAACAATTTGGATGGTTCTGTTCCATCAGATGTCTGGCGGAATATTGATTTCAGTGGAAATAGAAGTCTTATATTgtaagaccatgcataatctaccgttcttttcactttctctggaattagttaattgataatctaattctctgtcaatattttgtag
- - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT