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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTGAGCATGCTCAACACCTTGCTCCCGGTGCAGCCAAGCGCTTTGGCAAACATGGTATTATTGCATCTGTGCAGgtcatgtatctccttccactgctttatcttgtatacccgctatagaaacaatttatttttgttaccttatgacattttaattgtttggttgtttatcata...

Basic information

species Oryza sativa
transcript LOC_Os01g72350.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g72350.1 (Oryza sativa), 5'ss of exon 13
lower sequence: GRMZM2G310069_T01 (Zea mays), 5'ss of exon 12
ATTGAGCATGCTCAACACCTTGCTCCCGGTGCAGCCAAGCGCTTTGGCAAACATGGTATTATTGCATCTGTGCAGgtcatgtatctccttccactgctt---tatctt-gtatacccgctatagaaa-caatttatttttgttaccttatgacattttaattgtttggttgtttatcata------------------------------------
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ATCGAACATGCCCAACATCTGGCTCCAGGTGCAGCAAACCGCTTTGGCAAGCATGGTACCATTGCATCCGTGCAGgtcaactattctgttccattgctactgtatattcgtctttatgctttgcagagcagattgtgaattgaaatgtcccgcttctgaattccttttttataaaaaaaacttccagttctgaagtatctgctttactgttgacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29629495|gb|CB634504.1|CB634504
EST:     TGGCAAACATGGTATTATTGCATCTGTGCAG                         CCTGATCATATATTAGATGATGCCAATTCTGCTGGGAAGAAAATTGGGATA
genomic: TGGCAAACATGGTATTATTGCATCTGTGCAGgtcatgtatc ... tgtttgccagCCTGATCATATATTAGATGATGCCAATTCTGCTGGGAAGAAAATTGGGATA